Pypiper

A lightweight python toolkit for gluing together restartable, robust shell pipelines. Learn more in the documentation.

Name	Name	Last commit message	Last commit date
Latest commit donaldcampbelljr Merge pull request #232 from databio/dev Feb 25, 2025 7c0e129 · Feb 25, 2025 History 1,135 Commits
.github/workflows	.github/workflows	updated black version for github actions	Feb 25, 2025
docs	docs	Fixed warnings in Python >3.12	Feb 25, 2025
docs_jupyter	docs_jupyter	Merge branch 'master' of github.com:databio/pypiper into dev	Apr 29, 2019
example_pipelines	example_pipelines	use f-strings in example pipelines	Feb 17, 2024
pypiper	pypiper	added few more regex strings	Feb 25, 2025
requirements	requirements	update version and changelog in preparation for 0.14.3	Oct 2, 2024
tests	tests	test solution for #212	Feb 18, 2024
.gitignore	.gitignore	log outfile directly, and clean up logging code. Fix #210	Feb 17, 2024
.travis.yml	.travis.yml	dont test py3.4	Jan 8, 2020
LICENSE.txt	LICENSE.txt	Create LICENSE.txt	Jun 25, 2018
MANIFEST.in	MANIFEST.in	Packaging for pypi	Feb 27, 2018
README.md	README.md	https updates	Jan 17, 2024
design-notes.md	design-notes.md	a few doc changes	Dec 5, 2017
init_interactive.py	init_interactive.py	reformat, update PipestatManafer configuration	May 4, 2021
logo_pypiper.svg	logo_pypiper.svg	add svg	Dec 13, 2017
mkdocs.yml	mkdocs.yml	add pipestat integration documentation	May 7, 2021
setup.cfg	setup.cfg	facilitate python setup.py test; upgrade pytest to work around more-i…	Feb 19, 2019
setup.py	setup.py	0.14.0 Release (#200 )	Dec 22, 2023

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