Bed file updating, and partial partial processing #508

	name: Run pytests

	on:
	push:
	branches: [master, dev]
	pull_request:
	branches: [master, dev]
	workflow_dispatch:
	inputs: null

	jobs:
	pytest:
	strategy:
	matrix:
	python-version: ["3.9", "3.12"]
	os: [ubuntu-latest] # can't use macOS when using service containers or container jobs
	runs-on: ${{ matrix.os }}
	services:
	postgres:
	image: postgres
	env:
	POSTGRES_USER: postgres
	POSTGRES_PASSWORD: docker
	POSTGRES_DB: bedbase
	POSTGRES_HOST: localhost
	ports:
	- 5432:5432
	options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install uv
	run: pip install uv

	- name: Install dev dependencies
	run: if [ -f requirements/requirements-dev.txt ]; then uv pip install -r requirements/requirements-dev.txt --system; fi

	- name: Install test dependencies
	run: if [ -f requirements/requirements-test.txt ]; then uv pip install -r requirements/requirements-test.txt --system; fi

	- name: Install package
	run: uv pip install . --system

	- name: Run pytest tests
	run: pytest tests -x -vv

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