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chore: fix for bad link making unavailable zotero post
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danieltomasz committed Jul 11, 2024
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10 changes: 10 additions & 0 deletions content/August 2022.md
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# August 2022

1. How to change someone mind, the best way is to dissolve the question
[Listen and Adapt - by Tom Stafford - Reasonable People](https://tomstafford.substack.com/p/listen-and-adapt)
2.[kapitalizm platform](http://malyformat.com/2022/07/kapitalizm-platform/)
Ekstrakcja i analiza danych nie tyle całkowicie zastępuje ekstrakcję „materialnych” surowców typu ropa, gaz, węgiel, stal czy koltan, co raczej stanowi w obliczu nadwyżki mocy produkcyjnych kapitalizmu (_overcapacity_) i spadku rentowności całego sektora przemysłowego najważniejsze źródło wartości dodatkowej. Platformy Srnicek definiuje jako „cyfrowe infrastruktury, które umożliwiają interakcję dwóm lub więcej grupom”. Platformy są pośrednikami między różnymi grupami użytkowników, rejestrując, przechowując i wykorzystując dane uzyskane od swoich klientów do szeregu zadań optymalizacyjno-gospodarczych, dając użytkującym je podmiotom przewagę konkurencyjną.
(http://malyformat.com/2022/07/kapital-mieli-planete/)
(http://malyformat.com/2022/07/anatomia-rowni-pochylej/)
3. Doctors with cancer are often said to present with advanced disease, having dismissed and rationalised away the early symptoms for far too long. I was well aware of this phenomenon, but this knowledge did not prevent me from falling victim to it myself. Prostatism affects most older men – in medical language, frequency and urgency of [micturition](https://www.nursingtimes.net/clinical-archive/continence/the-physiology-of-micturition-22-07-2003/), and poor flow. In medical school, students are taught a process called the diagnostic sieve. Inflammation of the prostate cannot be distinguished from cancer in its early stages. In theory I knew this, but for too many years I had indeed chosen to bury my head in the sand.
(http://malyformat.com/2022/07/nie-ma-przezyc-niewaznych/)
20 changes: 11 additions & 9 deletions content/posts/2024/2024-06-13 How to rename files using Zotero.md
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---
title: "How to autorename files using Zotero"
title: "How to make your reaserch life easier with Zotero: automate download and renamingfiles"
description: "Autorenaming - another reason that Zotero is great"
url: "/2024/zotero-rename-files"
date: "2024-06-13"
Expand All @@ -8,32 +8,34 @@ summary: File renaming automation with Zotero
tags: [Zotero, Bibliography]
---

After listening an episode of `PhD Life Coach` podcast (reccomeded to everyone relared to academia) on [How to be your own best personal assistant](https://thephdlifecoach.buzzsprout.com/1992545/15220518-2-39-how-to-be-your-own-best-personal-assistant) Iearned that some academic people still spent their time on renaming pdfs downloaded from internet. I want to share an important message to those people :) :
After listening an episode of `PhD Life Coach` podcast (recommend to everyone related to academia) on [How to be your own best personal assistant](https://thephdlifecoach.buzzsprout.com/1992545/15220518-2-39-how-to-be-your-own-best-personal-assistant) Iearned that some academic people still spent their time on renaming pdfs downloaded from internet. I want to share an important message to those people :) :

1. If you deal if structured articles (web, pdf) please use Reference Mangers, even if you don't cite those articles that often; It will remove many of your headeaches and you can have nice organisation of your research materials
1. If you deal if structured articles (web, pdf) please use Reference Mangers, even if you don't cite those articles that often; It will remove many of your headaches and you can have nice organization of your research materials
2. Even if you want to store PDFs inside specific projects a Reference Mangers can be really useful by automatic file renaming for you (you can move this files to another folder later). If you need to standardize the naming convention for all your PDF files or want to include specific metadata in the file names, Zotero or other reference mangers offers built-in functionalities and add-ons to achieve this efficiently.

Here a quick tips how to rename files using Zotero.

I am using [Zotero 7 Beta](https://www.zotero.org/support/beta_builds) (which offer nicer interface that [Zotero 6](https://www.zotero.org/download/) and some additional features like epub or webpages annotation, and is really stable and I hope will soon released as stable version) so my description might be slightly different from what people using previous version may sees .

- In Zotero Go to Edit > Preferences (or Zotero > Preferences on a Mac).
- In the General tab, check the box •` Automatically rename locally added files`
- In Zotero go to `Edit` > `Preferences` (or `Zotero` > `Preferences` on a Mac).
- In the General tab, check the box •`Automatically rename locally added files`

The 'Rename linked files' will matter only the files added to Zotero items arent story with Zotero folder (where every bibliographic item has its own folder with the not so meaningful alphanumeric name ) but out outside of Zotero (when you move the file, you will broke the link )
The 'Rename linked files' will matter only the files added to Zotero items aren't story with Zotero folder (where every bibliographic item has its own folder with the not so meaningful alphanumeric name ) but out outside of Zotero (when you move the file, you will broke the link )

if you click `Customize Filename Format…` you can customize the format,.

For example using filename template
`{{ firstCreator suffix=" - " }}{{ year suffix=" - " }}{{ title truncate="100" }}` the resulting name will result in the filename similar to the one below:
`{{ firstCreator suffix=" - " }}{{ year suffix=" - " }}{{ title truncate="100" }}` the resulting name will result in the filename similar to the one below:
`Aljalal et al. - 2024 - Selecting EEG channels and features using multi-objective optimization for accurate MCI detection v.pdf`

On the official documentation page you can find the options you can use explained in more depth [file_renaming \[Zotero Documentation\]](https://www.zotero.org/support/file_renaming)

You easily rename in bulk the files that you already downloaded and store in Zotero if for some reason you prefer to change the pattern in the future.

Zotero will add a great value to you ith its Browser Plugin Zotero Connector (which attomatical download and add pdf (if you have acces to it on publishers page) or snapshot of webpage to your local library ), and apperently this is not a comment knowledge, as prof. Inga Mewburn from [The Thesis Whisperer][thttps://thesiswhisperer.com/] blog and On the reg podcast recently admitted in one of the episosed that she learned about the connector after few years of using Zotero.
Zotero is adding a great QoL value with its Browser Plugin Zotero Connector (which automatically download and add pdf (if you have access to it on publishers page) or snapshot of webpage to your local library ), and apparently this is not a comment knowledge, as prof. Inga Mewburn from [The Thesis Whisperer][thttps://thesiswhisperer.com/] blog and On the reg podcast recently admitted in one of the episodes that she learned about the connector after few years of using Zotero.

If you prefer to have linked files in one big folder, the Zotfile or other plugin that offer the same capabilities are something for you.

Even if you prefer have PDFs in the folders of your projects, you can always easily open folder conating the renamed files and move it to the project folder.
Even if you prefer have PDFs in the folders of your projects, you can always easily open folder containing the renamed files and move it to the project folder.

I didn't create here a full tutorial or covered many helpful features of Zotero, but you can find many great tutorials on the internet. I am also a big fan of integrating Zotero with [Obsidian](https://obsidian.md/), you could find some example vault how it could be used here:[rlaker/Obsidian-for-Academia: Demo vault to explain how to use Obsidian, git and Zotero](https://github.com/rlaker/Obsidian-for-Academia) with another writeup here: [Integrating Obsidian with Zotero – RadOncNotes](https://radoncnotes.com/2024/03/08/integrating-obsidian-with-zotero/).
4 changes: 2 additions & 2 deletions content/posts/2024/2024-06-14 Tips for using Github.md
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---
title: "Github Education Pack and other tips"
description: "Autorenaming - another reason that Zotero is great"
url: "/2024/zotero-rename-files"
description: "Some tips for using Github that you might not know about"
url: "/2024/git-github-tips"
date: "2024-06-14T1:00:00-07:00"
draft: false
tags: [tips, github]
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27 changes: 26 additions & 1 deletion content/posts/2024/drafts/Papers 2024-06.md
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Expand Up @@ -9,4 +9,29 @@ As you can see from my other posts, I am avid Zotero user :)

It means that I download so many more papers than I able to read. To force myself to learn more from the literature and media I am consuming i will try to use this blog to mention and summerise in broad terms at least some of them.

June 2024
June 2024

https://replicationindex.com/2024/06/18/attack-on-the-pseudometricians/
https://thepointmag.com/politics/the-risk-of-the-universal/
https://neerlandistiek.nl/2024/06/rebellie-in-de-gentse-letteren-2/
https://blog.donders.ru.nl/?p=16428&lang=en Cognitive reserve

https://simonwillison.net/2024/Jun/17/pkgutil-resolve-name/#atom-everything

https://mastodon.online/@tomstafford/112630440250655185
https://jamanetwork.com/journals/jamapsychiatry/article-abstract/2819863

https://simonwillison.net/2024/Jun/16/github-copilot-chat-prompt-injection/

Gopnik and Raising LLMS

Podcast with Marek wypych
https://3quarksdaily.com/3quarksdaily/2024/06/how-to-raise-your-artificial-intelligence-a-conversation-with-alison-gopnik-and-melanie-mitchell.html

Data analysis pipeline https://www.startdataengineering.com/post/data-engineering-projects/

Tools - markmap extension for vscode and obsidian
https://marketplace.visualstudio.com/items?itemName=gera2ld.markmap-vscode

bayesian statistics baysics
https://evalf21.classes.andrewheiss.com/resource/bayes/

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