AdvancedR3: Learning reproducible workflows and open collaboration in R

This project uses data from a lipidomics project as an example to learn how to work in an open and reproducible way. The project also focus on making reproducible analysis pipelines.

Brief description of folder and file contents

The following folders contain:

• data-raw/ : Raw lipidomics data
• data/: pre-processed lipidomics data
• doc/: learning Quarto document
• R/: Script for functions

Installing project R package dependencies

If dependencies have been managed by using usethis::use_package("packagename") through the DESCRIPTION file, installing dependencies is as easy as opening the AdvancedR3.Rproj file and running this command in the console:

# install.packages("remotes")
remotes::install_deps()

You'll need to have remotes installed for this to work.

Website

Go to this website to see the results.

Resource

For more information on this folder and file workflow and setup, check out the prodigenr online documentation.