Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

prototype parallel deskew implementation #33

Closed
wants to merge 15 commits into from
Closed

prototype parallel deskew implementation #33

wants to merge 15 commits into from

Commits on May 1, 2023

  1. prototype parallel deskew implementation

    @ieivanov
    ieivanov committed May 1, 2023
    Configuration menu
    Copy the full SHA
    3062cc4 View commit details
    Browse the repository at this point in the history

Commits on May 26, 2023

  1. Merge branch 'main' of github.com:czbiohub/mantis into feature/parall… 

    …el-deskew
    @edyoshikun
    edyoshikun committed May 26, 2023
    Configuration menu
    Copy the full SHA
    5606cd2 View commit details
    Browse the repository at this point in the history

  2. added scipy dependency

    @edyoshikun
    edyoshikun committed May 26, 2023
    Configuration menu
    Copy the full SHA
    2b61e4e View commit details
    Browse the repository at this point in the history

Commits on May 27, 2023

  1. refactoring deskew to comply to our single position standard. 

    this is adds the skeleton to multiprocessing per position over T and C.
    @edyoshikun
    edyoshikun committed May 27, 2023
    Configuration menu
    Copy the full SHA
    60651ad View commit details
    Browse the repository at this point in the history

  2. adding napari and iohub dependencies

    @edyoshikun
    edyoshikun committed May 27, 2023
    Configuration menu
    Copy the full SHA
    32bb3bc View commit details
    Browse the repository at this point in the history

  3. fixing mistake on changing this file

    @edyoshikun
    edyoshikun committed May 27, 2023
    Configuration menu
    Copy the full SHA
    54e20c4 View commit details
    Browse the repository at this point in the history

Commits on May 30, 2023

  1. revive accidental deletion

    @talonchandler
    talonchandler committed May 30, 2023
    Configuration menu
    Copy the full SHA
    ee7c575 View commit details
    Browse the repository at this point in the history

Commits on May 31, 2023

  1. fix input-output mixup bug

    @talonchandler
    talonchandler committed May 31, 2023
    Configuration menu
    Copy the full SHA
    57fc884 View commit details
    Browse the repository at this point in the history

  2. cleanup

    @talonchandler
    talonchandler committed May 31, 2023
    Configuration menu
    Copy the full SHA
    94b6cb4 View commit details
    Browse the repository at this point in the history

  3. whoops

    @talonchandler
    talonchandler committed May 31, 2023
    Configuration menu
    Copy the full SHA
    b10417c View commit details
    Browse the repository at this point in the history

  4. remove vestigial param

    @talonchandler
    talonchandler committed May 31, 2023
    Configuration menu
    Copy the full SHA
    0353f18 View commit details
    Browse the repository at this point in the history

  5. process positions sequentially and parellize T and C.

    @edyoshikun
    edyoshikun committed May 31, 2023
    Configuration menu
    Copy the full SHA
    e8dcc43 View commit details
    Browse the repository at this point in the history

  6. change reader mode

    @talonchandler
    talonchandler committed May 31, 2023
    Configuration menu
    Copy the full SHA
    7bf7cb6 View commit details
    Browse the repository at this point in the history

Commits on Jun 8, 2023

  1. have a flag for slurm

    @edyoshikun
    edyoshikun committed Jun 8, 2023
    Configuration menu
    Copy the full SHA
    c06aa67 View commit details
    Browse the repository at this point in the history

Commits on Jun 9, 2023

  1. cleaning up the deskew cli function.

    @edyoshikun
    edyoshikun committed Jun 9, 2023
    Configuration menu
    Copy the full SHA
    ed8bb2e View commit details
    Browse the repository at this point in the history