Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Slurmkit copy n paste #140

Closed
wants to merge 14 commits into from
Closed

Slurmkit copy n paste #140

wants to merge 14 commits into from

Conversation

edyoshikun
Copy link
Contributor

Example slurm script that I use for copy pasting and cropping data.

@edyoshikun
fixing the t_idx issue that should enumerate
abf4970
@edyoshikun
shouldve used zip instad of itertools.product
550b4b7
@edyoshikun
make estimate affine show the registration.
7bb84e1
@edyoshikun
adding similarity transform as an option to do (xyx scale,rot,translate)
d85d720
@edyoshikun
Merge branch 'main' of github.com:czbiohub/mantis into fix_apply_affine
c7cc38c
@edyoshikun
reverting utils to main
0397bd1
@edyoshikun
re-adding the t_idx_out
d73be7d
@edyoshikun
fixing case when dataset is 2D
db033d6 
updating docstring for CLI using similarity vs euclidian
@edyoshikun
fixing bug in lir box calculation. Used the wrong axis.
1e919bb
@edyoshikun
adding a fix to when we provide a list of time_indeces to process.
6ca5069
@edyoshikun
replacing itertool.product with zip
d54394f
@edyoshikun
Merge branch 'main' of github.com:czbiohub/mantis into fix_apply_affine
445bfd2
@edyoshikun
copy_n_paste demo
7dc17ba
@edyoshikun
demo with filepaths
ef9f11d
@edyoshikun edyoshikun marked this pull request as draft June 10, 2024 21:57
@edyoshikun edyoshikun changed the base branch from main to fix_apply_affine June 10, 2024 21:59
@ieivanov ieivanov mentioned this pull request Jul 1, 2024
Closed
11 tasks
@edyoshikun edyoshikun requested review from ieivanov and removed request for ieivanov July 2, 2024 22:27
@edyoshikun
Copy link
Contributor Author

Check #145 . This function might be more useful.

@talonchandler talonchandler deleted the branch fix_apply_affine July 11, 2024 22:35
@ieivanov ieivanov deleted the slurmkit_copy_n_paste branch August 13, 2024 15:54
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@edyoshikun @talonchandler