This package is deprecated and will no longer be supported. Please use at your own risk!

cytoplot

Package for visualizing high-dimensional single-cell data

Installation

You may need to install some libraries:

OSX:

brew install fftw libtiff

Ubuntu:

sudo apt-get install -y libfftw3-dev libtiff5 libtiff5-dev 

Install the package:

install.packages("devtools")

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(version = "3.10")

devtools::install_github("cytomining/cytoplot", 
                         dependencies = TRUE, 
                         build_vignettes = TRUE, 
                         repos = BiocInstaller::biocinstallRepos())

You may need to do run that again in order to build the vignettes correctly (seems like a bug in install_github):

devtools::install_github("cytomining/cytoplot", 
                         dependencies = TRUE, 
                         build_vignettes = TRUE, 
                         force = TRUE,
                         repos = BiocInstaller::biocinstallRepos())