v0.0.12

Changes

• Add image filename columns to CellProfiler presets (@d33bs via #252)
• Add Python 3.13 compatibility (@d33bs via #244)
• Bump cytominer-database from 0.3.4 to 0.3.5 (@dependabot via #248)
• Bump sphinxcontrib-mermaid from 0.9.2 to 1.0.0 (@dependabot via #246)
• Bump botocore from 1.35.51 to 1.35.54 (@dependabot via #247)
• Bump sphinx from 6.2.1 to 7.4.7 (@dependabot via #249)
• Bump pytest from 7.4.4 to 8.3.3 (@dependabot via #245)
• Update pre-commit hooks and apply linting checks (@d33bs via #242)
• Remove python 3.8 compatibility (@d33bs via #243)
• Bump botocore from 1.34.142 to 1.35.51 (@dependabot via #241)
• Bump dunamai from 1.19.2 to 1.22.0 (@dependabot via #239)
• Bump myst-parser from 2.0.0 to 3.0.1 (@dependabot via #237)
• Bump pytest-cov from 4.1.0 to 5.0.0 (@dependabot via #236)
• Enable Dependabot updates to Poetry (@d33bs via #235)

v0.0.11

Changes

• Add tablenumber capabilities to distinguish repeated image numbers from multiple datasets (@d33bs via #188)
• Add join concatenation parameter distinction (@d33bs via #181)
• Disable DuckDB progress bars (@d33bs via #233)
• Format pyproject.toml file with pyproject-fmt using pre-commit (@d33bs via #232)
• Bump pre-commit/action from 3.0.0 to 3.0.1 (@dependabot via #231)
• Bump release-drafter/release-drafter from 5 to 6 (@dependabot via #229)
• Bump actions/setup-python from 4 to 5 (@dependabot via #230)
• Enable Dependabot updates for GitHub Actions (@d33bs via #228)
• Bump cryptography from 42.0.5 to 43.0.1 (@dependabot via #225)

v0.0.10

Changes

• Move to keyset pagination (@d33bs via #220)
• Fix dependency resolution issues for non-locked installations of CytoTable in tests (@d33bs via #217)

v0.0.9

Changes

• Bump zipp from 3.18.1 to 3.19.1 (@dependabot via #216)
• Bump certifi from 2024.2.2 to 2024.7.4 (@dependabot via #215)
• Bump requests from 2.31.0 to 2.32.2 (@dependabot via #213)
• Use real AWS S3 data tests and apply related fixes (@d33bs via #212)
• Bump urllib3 from 1.26.18 to 1.26.19 (@dependabot via #210)

v0.0.8

Changes

• Increase sorting scalability via CytoTable metadata columns (@d33bs via #204)
• Bump flask-cors from 4.0.0 to 4.0.1 (@dependabot via #207)
• Bump werkzeug from 3.0.1 to 3.0.3 (@dependabot via #205)
• Bump jinja2 from 3.1.3 to 3.1.4 (@dependabot via #206)
• Enable Parsl app concurrency with futures (@d33bs via #194)
• Remove SECURITY.md to rely on organization-wide community health file (@d33bs via #184)
• Use declarative version specification for Ubuntu GitHub Actions runners (@d33bs via #199)
• Avoid macos-latest Python version compatibility issues in GitHub Actions runner images (@d33bs via #196)

v0.0.7

Changes

• Use compartment tables as basis of preset joins (@d33bs via #183)
• Add order to limit and offset queries for deterministic results (@d33bs via #182)
• Bump idna from 3.6 to 3.7 (@dependabot via #186)
• Enable Python 3.12 compatibility through dependency-based updates (@d33bs via #174)
• Bump scipy from 1.9.3 to 1.10.0 (@dependabot via #173)
• Add python 3.11 to automated tests (@d33bs via #172)
• Remove poetry lockfile to better project testing with scheduled trigger (@d33bs via #170)
• Changing python's upper limit version to python<3.12 (@axiomcura via #158)

v0.0.6

Changes

• Move citation.cff validation to pre-commit check (@d33bs via #165)
• Remove duplicative all-at-once concatenate with join operations (@d33bs via #168)
• Add and apply pre-commit poetry checks (@d33bs via #164)

v0.0.5

Changes

• Set upper limit on DuckDB version (<0.10.0) to avoid Arrow errors (@d33bs via #166)
• Add weekly testing for preventative awareness of external changes (@d33bs via #167)
• Bump cryptography from 42.0.2 to 42.0.4 (@dependabot via #162)
• Bump cryptography from 41.0.6 to 42.0.2 (@dependabot via #161)
• Add pytest warning filters for pkg_resource and sqlalchemy (@d33bs, @kenibrewer via #153)
• Fix source filename ingest for IN Carta data with spaces and inconsistent casing (@d33bs via #151)
• Add security community health file (@d33bs via #147)

v0.0.4

Changes

• Add IN Carta preset and related compatibility changes + testing (@d33bs via #145)
• Move from dev-dependencies to poetry group specification (@d33bs via #146)
• Define and demonstrate data transform types within documentation (@d33bs via #142)
• Bump jinja2 from 3.1.2 to 3.1.3 (@dependabot via #144)
• Add IN Carta test data from Colas Lab (@d33bs via #141)
• Increase documentation on cloud-based data sources (@d33bs via #138)
• Move PR template credit to un-rendered HTML comment (@d33bs via #139)
• Add project title definition (@d33bs via #135)
• Add version metadata to CytoTable Parquet output (@d33bs via #134)
• Add poetry dynamic versioning and update release process (@d33bs via #132)
• Bump paramiko from 3.1.0 to 3.4.0 (@dependabot via #133)
• Bump cryptography from 41.0.4 to 41.0.6 (@dependabot via #131)
• Bump werkzeug from 2.2.3 to 3.0.1 (@dependabot via #127)
• Bump flask from 2.2.3 to 2.2.5 (@dependabot via #130)
• Bump requests from 2.28.2 to 2.31.0 (@dependabot via #129)
• Bump cryptography from 40.0.1 to 41.0.4 (@dependabot via #128)
• Bump certifi from 2022.12.7 to 2023.7.22 (@dependabot via #126)
• Bump urllib3 from 1.26.15 to 1.26.18 (@dependabot via #125)
• Bump pygments from 2.14.0 to 2.15.0 (@dependabot via #124)
• Bump PyArrow dependency for CVE-2023-47248 (@d33bs via #123)

v0.0.3

Changes

• Patch v0.0.3 (@d33bs via #121)
• Add related software + paper references to citations (@d33bs via #120)
• Update readme with additional installation notes (@d33bs via #119)
• Move to offset-based joins (@d33bs via #113)
• Add PR author mentions to release drafts (@d33bs via #118)
• Fix PyPI readme image reference (@d33bs via #117)
• Use Parsl NoDataFlowKernelError for detecting existing Parsl configurations (@d33bs via #112)
• Enable DuckDB >= v0.8.0 (@d33bs via #114)