Remove dependency on parser library

cucapra · Mar 17, 2024 · d2eb84c · d2eb84c
1 parent d588d5b
commit d2eb84c
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Showing 3 changed files with 1 addition and 162 deletions.
diff --git a/polbin/Cargo.lock b/polbin/Cargo.lock
diff --git a/polbin/Cargo.toml b/polbin/Cargo.toml
@@ -6,7 +6,6 @@ edition = "2021"
 [dependencies]
 argh = "0.1.12"
 bstr = "1.9.1"
-gfa = "0.10.1"
 memmap = "0.7.0"
 num_enum = "0.7.2"
 zerocopy = { version = "0.7.32", features = ["derive"] }

diff --git a/polbin/src/gfaline.rs b/polbin/src/gfaline.rs
@@ -210,10 +210,6 @@ fn parse_align(s: &[u8]) -> PartialParseResult<Vec<AlignOp>> {
 }
 
 /// Parse GFA paths' segment lists. These look like `1+,2-,3+`.
-///
-/// The underlying gfa-rs library does not yet parse the actual segments
-/// involved in the path. So we do it ourselves: splitting on commas and
-/// matching the direction.
 pub struct StepsParser<'a> {
     str: &'a [u8],
     index: usize,