Stop using odgi's Python bindings in calyx_depth.py
#115
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| name: CodeQuality | |
| on: [pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: CodeQuality | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.x | |
| - run: pip install --upgrade pip | |
| - run: pip install "black<24" mypy==v1.3 | |
| - run: black --diff --check $(git ls-files '*.py') | |
| - run: MYPYPATH=mygfa mypy --disallow-untyped-defs mygfa slow_odgi pollen_data_gen |