version -> 0.12.0, removed humann3/samestr #97
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| name: Singularity Build (native) | |
| on: | |
| push: | |
| # Edit the branches here if you want to change deploy behavior | |
| branches: | |
| - main | |
| - master | |
| - dev | |
| # Do the builds on all pull requests (to test them) | |
| pull_request: [] | |
| jobs: | |
| changes: | |
| name: "Changed Singularity Recipes" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| changed_file: ${{ steps.files.outputs.added_modified }} | |
| steps: | |
| - id: files | |
| uses: jitterbit/get-changed-files@b17fbb00bdc0c0f63fcf166580804b4d2cdc2a42 | |
| with: | |
| format: 'json' | |
| build-test-containers: | |
| needs: | |
| - changes | |
| runs-on: ubuntu-latest | |
| strategy: | |
| # Keep going on other deployments if anything bloops | |
| fail-fast: false | |
| matrix: | |
| changed_file: ${{ fromJson(needs.changes.outputs.changed_file) }} | |
| name: Check ${{ matrix.changed_file }} | |
| steps: | |
| - name: Continue if Singularity Recipe | |
| run: | | |
| # Continue if we have a changed Singularity recipe | |
| if [[ "${{ matrix.changed_file }}" = *Singularity* ]]; then | |
| echo "keepgoing=true" >> $GITHUB_ENV | |
| fi | |
| - name: Set up Go 1.13 | |
| if: ${{ env.keepgoing == 'true' }} | |
| uses: actions/setup-go@v1 | |
| with: | |
| go-version: 1.13 | |
| id: go | |
| - name: Install Dependencies | |
| if: ${{ env.keepgoing == 'true' }} | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y \ | |
| build-essential \ | |
| libssl-dev \ | |
| uuid-dev \ | |
| libgpgme11-dev \ | |
| squashfs-tools \ | |
| libseccomp-dev \ | |
| pkg-config | |
| - name: Install Singularity | |
| if: ${{ env.keepgoing == 'true' }} | |
| env: | |
| SINGULARITY_VERSION: 3.8.1 | |
| GOPATH: /tmp/go | |
| run: | | |
| mkdir -p $GOPATH | |
| sudo mkdir -p /usr/local/var/singularity/mnt && \ | |
| mkdir -p $GOPATH/src/github.com/sylabs && \ | |
| cd $GOPATH/src/github.com/sylabs && \ | |
| wget -qO- https://github.com/sylabs/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-ce-${SINGULARITY_VERSION}.tar.gz | \ | |
| tar xzv && \ | |
| cd singularity-ce-${SINGULARITY_VERSION} && \ | |
| ./mconfig -p /usr/local && \ | |
| make -C builddir && \ | |
| sudo make -C builddir install | |
| - name: Check out code for the container build | |
| if: ${{ env.keepgoing == 'true' }} | |
| uses: actions/checkout@v2 | |
| - name: Build Container | |
| if: ${{ env.keepgoing == 'true' }} | |
| env: | |
| recipe: ${{ matrix.changed_file }} | |
| run: | | |
| ls | |
| if [ -f "${{ matrix.changed_file }}" ]; then | |
| sudo -E singularity build container.sif ${{ matrix.changed_file }} | |
| tag=$(echo "${recipe/Singularity\./}") | |
| if [ "$tag" == "Singularity" ]; then | |
| tag=latest | |
| fi | |
| # Build the container and name by tag | |
| echo "Tag is $tag." | |
| echo "tag=$tag" >> $GITHUB_ENV | |
| else | |
| echo "${{ matrix.changed_file }} is not found." | |
| echo "Present working directory: $PWD" | |
| ls | |
| fi | |
| - name: Login and Deploy Container | |
| if: (github.event_name != 'pull_request') | |
| env: | |
| keepgoing: ${{ env.keepgoing }} | |
| run: | | |
| if [[ "${keepgoing}" == "true" ]]; then | |
| echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ secrets.GHCR_USERNAME }} --password-stdin oras://ghcr.io | |
| singularity push container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${tag} | |
| fi |