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Add Puhti web interface
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|---|---|---|
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| # Allas – object storage | ||
|
|
||
| What is it? | ||
|
|
||
| * Allas is a **storage service**, technically object storage | ||
| * **For CSC project lifetime: 1-5 years** | ||
| * **Capacity: 10 - 200 Tb for free**, more with contract | ||
| * Accessible from CSC computing services, own laptop or other servers | ||
| * Private data - access for project members only | ||
| * Possibility to make data public or share with other CSC project | ||
| * For computation the data has to typically be copied to the computing environment | ||
| * [CSC Docs: Allas](https://docs.csc.fi/data/Allas/) | ||
| * LUMI-O is very similar to Allas | ||
| * [LUMI Docs: LUMI-O](https://docs.lumi-supercomputer.eu/storage/lumio/) | ||
|
|
||
| What is it NOT? | ||
|
|
||
| - A file system (even though many tools try to fool you to think so). It is just a place to store static data objects. | ||
| - A data management environment. Tools for etc. search, metadata, version control and access management are minimal. | ||
| - A foolproof back up service. Project members can delete all the data with just one command. | ||
|
|
||
|  | ||
|
|
||
| ## Allas terminology | ||
|
|
||
| - Access to Allas is provided per **CSC project** | ||
| - All project members have equal rights to the data, everybody can add and delete. | ||
| - Main data unit is **buckets** | ||
| - Name of the bucket must be unique within Allas | ||
| - For data organization and access administration | ||
| - Data is stored as **objects** within a bucket | ||
| - Practically: object = file | ||
| - In reality, there is no hierarchical directory structure within a bucket, although it sometimes looks like that. | ||
| - Object name can be `/data/myfile.zip` and some tools may display it as `data` folder with `myfile.zip` file. | ||
|
|
||
| ### Things to consider | ||
|
|
||
| - Should each file be stored as a separate object or should I collect it into bigger chunks? | ||
| - Depends how you want to use the data later, access to single files or not. | ||
| - Compression? | ||
| - What will happen to the data later on? | ||
|
|
||
| ## Allas APIs | ||
|
|
||
| - S3 and SWIFT. | ||
| - **For new projects S3 is recommended** | ||
| - SWIFT might be soon deprecated. | ||
| - Avoid cross-using SWIFT- and S3-based objects! | ||
|
|
||
| ## Tools for Allas | ||
|
|
||
| - **Web interfaces**: | ||
| - **cPouta, Mahti web interface**, soon also Puhti web interface | ||
| - [cPouta web interface](https://pouta.csc.fi/dashboard) -> object store -> containers | ||
| - cPouta web interface only to see what data is in Allas, upload/download of single files. | ||
| - [Mahti web interface](https://mahti.csc.fi) also for bigger amounts of data (based on rclone) | ||
| - Log in with CSC username and password | ||
| - **Graphical tools**: | ||
| - **Cyberduck, S3 browser** (only for Windows), WinSCP | ||
| - For medium amounts of data, < 1 Tb. | ||
| - Very easy, but installation required. | ||
| - WinSCP is slower than others. | ||
| - **Command line tools**: | ||
| - **s3cmd, rclone**, a-commands | ||
| - For any amount of data, practically required if data size > 1 Tb. | ||
| - **For scripting**: | ||
| - Python: **boto3** library | ||
| - R: **aws3** library | ||
| - For connecting, these require **S3 access key and secret key** | ||
| - Easiest to [use Puhti for getting these](https://docs.csc.fi/data/Allas/using_allas/s3_client/#configuring-s3-connection-in-supercomputers) | ||
| - [CSC Docs: Allas clients](https://docs.csc.fi/data/Allas/) -> Allas clients | ||
|
|
||
| ## Accessing data directly from object storage | ||
|
|
||
| * Many GIS tools have good support for working with cloud storage, look for S3 in documentation. | ||
| * **GDAL** supports reading and writing directly to Allas. | ||
| * Applies also to other GDAL based tools: **Python (rasterio, geopandas)** and **R (sf, terra)**. | ||
| * Writing might be more limited. | ||
| * **QGIS** can read rasters and vectors. | ||
| * **ArcGIS** Pro can read rasters. | ||
| * [CSC Docs: Tutorial - Using geospatial files directly from cloud, inc Allas](https://docs.csc.fi/support/tutorials/gis/gdal_cloud/) | ||
| * [Example Python code for working with Allas and rasterio and geopandas](https://github.com/csc-training/geocomputing/blob/master/python/allas) | ||
| * [Example R code for working with Allas and terra and sf](https://github.com/csc-training/geocomputing/blob/master/R/allas/working_with_allas_from_R_S3.R) | ||
| # Allas – object storage | ||
|
|
||
| What is it? | ||
|
|
||
| * Allas is a **storage service**, technically object storage | ||
| * **For CSC project lifetime: 1-5 years** | ||
| * **Capacity: 10 - 200 Tb for free**, more with contract | ||
| * Accessible from CSC computing services, own laptop or other servers | ||
| * Private data - access for project members only | ||
| * Possibility to make data public or share with other CSC project | ||
| * For computation the data has to typically be copied to the computing environment | ||
| * [CSC Docs: Allas](https://docs.csc.fi/data/Allas/) | ||
| * LUMI-O is very similar to Allas | ||
| * [LUMI Docs: LUMI-O](https://docs.lumi-supercomputer.eu/storage/lumio/) | ||
|
|
||
| What is it NOT? | ||
|
|
||
| - A file system (even though many tools try to fool you to think so). It is just a place to store static data objects. | ||
| - A data management environment. Tools for etc. search, metadata, version control and access management are minimal. | ||
| - A foolproof back up service. Project members can delete all the data with just one command. | ||
|
|
||
|  | ||
|
|
||
| ## Allas terminology | ||
|
|
||
| - Access to Allas is provided per **CSC project** | ||
| - All project members have equal rights to the data, everybody can add and delete. | ||
| - Main data unit is **buckets** | ||
| - Name of the bucket must be unique within Allas | ||
| - For data organization and access administration | ||
| - Data is stored as **objects** within a bucket | ||
| - Practically: object = file | ||
| - In reality, there is no hierarchical directory structure within a bucket, although it sometimes looks like that. | ||
| - Object name can be `/data/myfile.zip` and some tools may display it as `data` folder with `myfile.zip` file. | ||
|
|
||
| ### Things to consider | ||
|
|
||
| - Should each file be stored as a separate object or should I collect it into bigger chunks? | ||
| - Depends how you want to use the data later, access to single files or not. | ||
| - Compression? | ||
| - What will happen to the data later on? | ||
|
|
||
| ## Allas APIs | ||
|
|
||
| - S3 and SWIFT. | ||
| - **For new projects S3 is recommended** | ||
| - SWIFT might be soon deprecated. | ||
| - Avoid cross-using SWIFT- and S3-based objects! | ||
|
|
||
| ## Tools for Allas | ||
|
|
||
| - **Web interfaces**: | ||
| - **cPouta, Puhti, Mahti web interface** | ||
| - [cPouta web interface](https://pouta.csc.fi/dashboard) -> object store -> containers | ||
| - cPouta web interface only to see what data is in Allas, upload/download of single files | ||
| - Log in with CSC username and password. | ||
| - [Puhti web interface](https://www.puhti.csc.fi/) and [Mahti web interface](https://www.mahti.csc.fi) also for bigger amounts of data (based on rclone) | ||
| - See [instructions](https://docs.csc.fi/computing/webinterface/file-browser/#accessing-allas-and-lumi-o) in Docs | ||
|
|
||
| - **Graphical tools**: | ||
| - **Cyberduck, S3 browser** (only for Windows), WinSCP | ||
| - For medium amounts of data, < 1 Tb. | ||
| - Very easy, but installation required. | ||
| - WinSCP is slower than others. | ||
| - **Command line tools**: | ||
| - **s3cmd, rclone**, a-commands | ||
| - For any amount of data, practically required if data size > 1 Tb. | ||
| - **For scripting**: | ||
| - Python: **boto3** library | ||
| - R: **aws3** library | ||
| - For connecting, these require **S3 access key and secret key** | ||
| - Easiest to [use Puhti for getting these](https://docs.csc.fi/data/Allas/using_allas/s3_client/#configuring-s3-connection-in-supercomputers) | ||
| - [CSC Docs: Allas clients](https://docs.csc.fi/data/Allas/) -> Allas clients | ||
|
|
||
| ## Accessing data directly from object storage | ||
|
|
||
| * Many GIS tools have good support for working with cloud storage, look for S3 in documentation. | ||
| * **GDAL** supports reading and writing directly to Allas. | ||
| * Applies also to other GDAL based tools: **Python (rasterio, geopandas)** and **R (sf, terra)**. | ||
| * Writing might be more limited. | ||
| * **QGIS** can read rasters and vectors. | ||
| * **ArcGIS** Pro can read rasters. | ||
| * [CSC Docs: Tutorial - Using geospatial files directly from cloud, inc Allas](https://docs.csc.fi/support/tutorials/gis/gdal_cloud/) | ||
| * [Example Python code for working with Allas and rasterio and geopandas](https://github.com/csc-training/geocomputing/blob/master/python/allas) | ||
| * [Example R code for working with Allas and terra and sf](https://github.com/csc-training/geocomputing/blob/master/R/allas/working_with_allas_from_R_S3.R) |