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ASIdiSPIM plugin: Added AcquisitionSettings class and started using i…
…t to help make the acquisitioncode more readable git-svn-id: https://valelab.ucsf.edu/svn/micromanager2/trunk@15599 d0ab736e-dc22-4aeb-8dc9-08def0aa14fd
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nico
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Jul 8, 2015
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plugins/ASIdiSPIM/src/org/micromanager/asidispim/Data/AcquisitionSettings.java
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| /////////////////////////////////////////////////////////////////////////////// | ||
| //FILE: AcquisitionSettings.java | ||
| //PROJECT: Micro-Manager | ||
| //SUBSYSTEM: ASIdiSPIM plugin | ||
| //----------------------------------------------------------------------------- | ||
| // | ||
| // AUTHOR: Nico Stuurman, Jon Daniels | ||
| // | ||
| // COPYRIGHT: University of California, San Francisco, & ASI, 2015 | ||
| // | ||
| // LICENSE: This file is distributed under the BSD license. | ||
| // License text is included with the source distribution. | ||
| // | ||
| // This file is distributed in the hope that it will be useful, | ||
| // but WITHOUT ANY WARRANTY; without even the implied warranty | ||
| // of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | ||
| // | ||
| // IN NO EVENT SHALL THE COPYRIGHT OWNER OR | ||
| // CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, | ||
| // INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES. | ||
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| package org.micromanager.asidispim.Data; | ||
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| import org.micromanager.asidispim.Utils.SliceTiming; | ||
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| /** | ||
| * Associative container for slice timing information. | ||
| * Public elements so they can be get/set directly, like C++ struct | ||
| * @author nico | ||
| */ | ||
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| public class AcquisitionSettings { | ||
| // if true, the tiger controller will run multiple timepoints | ||
| public boolean hardwareTimepoints_; | ||
| // MultiChannel mode | ||
| public MultichannelModes.Keys channelMode_; | ||
| // if true, use channels | ||
| public boolean useChannels_; | ||
| // number of channels for this acquisition | ||
| public int numChannels_; | ||
| // number of slices for this acquisition | ||
| public int numSlices_; | ||
| // number of timepoints for this acquisition | ||
| public int numTimepoints_; | ||
| // time between starts of timepoints | ||
| public double timePointInterval_; | ||
| // number of Sides from which we take data (diSPIM: 1 or 2) | ||
| public int numSides_; | ||
| // firstSide to take data from (A or B) | ||
| public String firstSide_; | ||
| // whether or not we use time points | ||
| public boolean useTimepoints_; | ||
| // piezo scanning, vibration, stage scanning, i.e. what is | ||
| // moved between slices | ||
| public AcquisitionModes.Keys spimMode_; | ||
| // true to use current Z position (e.g. autofocus), | ||
| // false to use specified acquisition center | ||
| public boolean centerAtCurrentZ_; | ||
| // wait in ms before starting each side (piezo only) | ||
| public float delayBeforeSide_; | ||
| // spacing between slices in microns | ||
| public float stepSizeUm_; | ||
| // low level controller timing parameters | ||
| public SliceTiming sliceTiming_; | ||
| } |
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