Full rebuild

.zenodo.json

@@ -39,6 +39,6 @@
   ],
   "license": "GPL-3.0+",
   "access_right": "open",
-  "version": "0.3.2.9000-59",
+  "version": "0.3.2.9000-61",
   "publication_date": "2024-03-16"
 }

BayLum.BuildResults/BayLum_0.3.2.9000-59-bibliography.bib → BayLum.BuildResults/BayLum_0.3.2.9000-61-bibliography.bib

@@ -3,7 +3,7 @@ @Manual{
 Luminescence and Radiocarbon Age Dating},
   author = {Claire Christophe and Anne Philippe and Sebastian Kreutzer and Guillaume Guérin and Frederik Harly Baumgarten},
   year = {2024},
-  note = {R package version 0.3.2.9000-59},
+  note = {R package version 0.3.2.9000-61},
   url = {https://CRAN.r-project.org/package=BayLum},
 }
 

BayLum.BuildResults/BayLum_0.3.2.9000-59-fun_bibliography.bib → BayLum.BuildResults/BayLum_0.3.2.9000-61-fun_bibliography.bib

@@ -3,7 +3,7 @@ @InCollection{
   title = {Age_Computation(): Bayesian analysis for the OSL age estimation of one sample},
   volume = {version:},
   author = {Christophe C and Kreutzer S and Philippe A and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -12,7 +12,7 @@ @InCollection{
   title = {Age_OSLC14(): Bayesian analysis for age estimation of OSL measurements and C-14 ages of various samples},
   volume = {version:},
   author = {Christophe C and Philippe A and Kreutzer S and Baumgarten FH},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -21,7 +21,7 @@ @InCollection{
   title = {AgeC14_Computation(): Bayesian analysis for C-14 age estimations of various samples},
   volume = {version:},
   author = {Christophe C and Philippe A and Guérin G and Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -30,7 +30,7 @@ @InCollection{
   title = {AgeS_Computation(): Bayesian analysis for OSL age estimation of various samples},
   volume = {version:},
   author = {Christophe C and Philippe A and Guérin G and Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -39,7 +39,7 @@ @InCollection{
   title = {combine_DataFiles(): Combine objects},
   volume = {version: 0.1.1},
   author = {Kreutzer S and Christophe C},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -48,7 +48,7 @@ @InCollection{
   title = {create_DataFile(): Prepare input data for subsequent BayLum Analysis},
   volume = {version: 0.1.0},
   author = {Kreutzer S and Christophe C},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -57,7 +57,7 @@ @InCollection{
   title = {create_FolderTemplates(): Create Folder Templates},
   volume = {version: 0.1.0},
   author = {Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -66,7 +66,7 @@ @InCollection{
   title = {create_ThetaMatrix(): Create Theta Matrix},
   volume = {version: 0.1.0},
   author = {Kreutzer S and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -75,7 +75,7 @@ @InCollection{
   title = {Generate_DataFile_MG-deprecated(): Generates, from one (or several) BIN file(s) of Multi-grain OSL measurements a list of luminescence data and information before statistical analysis (DEPRECATED)},
   volume = {version:},
   author = {Christophe C and Kreutzer S and Philippe A and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -84,7 +84,7 @@ @InCollection{
   title = {Generate_DataFile-deprecated(): Generates, from one (or several) BIN-file(s) of Single-grain OSL measurements, a list of luminescence data and information before statistical analysis (DEPRECATED)},
   volume = {version:},
   author = {Christophe C and Kreutzer S and Philippe A},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -93,7 +93,7 @@ @InCollection{
   title = {LT_RegenDose-deprecated(): Plots Lx/Tx as a function of the regenerative dose (DEPRECATED)},
   volume = {version:},
   author = {Christophe C and Kreutzer S and Philippe A and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -102,7 +102,7 @@ @InCollection{
   title = {Palaeodose_Computation(): Bayesian analysis for the palaeodose estimation of various samples},
   volume = {version:},
   author = {Christophe C and Kreutzer S and Philippe A and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -111,7 +111,7 @@ @InCollection{
   title = {plot_Ages(): Create Age Plot},
   volume = {version: 0.1.5},
   author = {Kreutzer S and Christophe C},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -120,7 +120,7 @@ @InCollection{
   title = {plot_MCMC(): Plot MCMC trajectories and posterior distributions},
   volume = {version: 0.1.5},
   author = {Kreutzer S and Christophe C},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -129,7 +129,7 @@ @InCollection{
   title = {plot_RegDosePoints(): Plot Regeneration Dose Points},
   volume = {version:},
   author = {Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -138,7 +138,7 @@ @InCollection{
   title = {plot_Scatterplots(): Display Scatter Plot Matrix of the Bayesian Age Results},
   volume = {version: 0.3.2},
   author = {Kreutzer S and Christophe C and Philippe A and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -147,7 +147,7 @@ @InCollection{
   title = {SC_Ordered(): Create Stratigraphically Ordered Sample Matrix},
   volume = {version:},
   author = {Christophe C and Philippe A and Kreutzer S and Guérin G},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -156,7 +156,7 @@ @InCollection{
   title = {SCMatrix(): Construct the Stratigraphic Constrain Matrix Interactively},
   volume = {version:},
   author = {Christophe C and Philippe A and Guérin G and Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -165,7 +165,7 @@ @InCollection{
   title = {write_BayLumFiles(): Write BayLum .csv-files},
   volume = {version: 0.1.0},
   author = {Baumgarten FH},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},
@@ -174,7 +174,7 @@ @InCollection{
   title = {write_YAMLConfigFile(): Write Auto Generated YAML BayLum Configuration File to the Disc},
   volume = {version: 0.1.0},
   author = {Kreutzer S},
-  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-59.},
+  booktitle = {Christophe, C., Philippe, A., Kreutzer, S., Guérin, G., Baumgarten, F.H., 2024. BayLum: Chronological Bayesian Models Integrating Optically Stimulated. R package version 0.3.2.9000-61.},
   publisher = {BayLum},
   year = {2024},
   url = {https://CRAN.r-project.org/package=BayLum},

DESCRIPTION

@@ -4,7 +4,7 @@ Title: Chronological Bayesian Models Integrating Optically Stimulated
         Luminescence and Radiocarbon Age Dating
 Description: Bayesian analysis of luminescence data and C-14 age estimates. Bayesian models are based on the following publications: Combes, B. & Philippe, A. (2017) <doi:10.1016/j.quageo.2017.02.003> and Combes et al (2015) <doi:10.1016/j.quageo.2015.04.001>. This includes, amongst others, data import, export, application of age models and palaeodose model.
 Date: 2024-03-16
-Version: 0.3.2.9000-59
+Version: 0.3.2.9000-61
 Author: Claire Christophe [aut], 
     Anne Philippe [aut, cre] (<https://orcid.org/0000-0002-5331-5087>), 
     Sebastian Kreutzer [aut] (<https://orcid.org/0000-0002-0734-2199>), 

Makefile

@@ -6,5 +6,5 @@ all:
 	exclude = c(\
 		'module_check_ReverseDependencies',\
 		'module_add_RLumTeam'),\
-		as_cran = FALSE,\
+		as_cran = TRUE,\
 		write_Rbuildignore = TRUE)";

NEWS.md

@@ -5,7 +5,7 @@
 
 <!-- NEWS.md was auto-generated by NEWS.Rmd. Please DO NOT edit by hand!-->
 
-# BayLum 0.3.2.9000-59 (2024-03-16)
+# BayLum 0.3.2.9000-61 (2024-03-16)
 
 **This version of `'BayLum'` requires R\>=4.1.x!**
 

codemeta.json

@@ -7,7 +7,7 @@
   "codeRepository": "https://github.com/crp2a/BayLum",
   "issueTracker": "https://github.com/crp2a/BayLum/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.3.2.9000.59",
+  "version": "0.3.2.9000.61",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -212,7 +212,7 @@
     },
     "SystemRequirements": "JAGS >= 4.3.2 (https://mcmc-jags.sourceforge.io/)"
   },
-  "fileSize": "3563.939KB",
+  "fileSize": "3563.969KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
@@ -251,7 +251,7 @@
       ],
       "name": "BayLum: Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating",
       "url": "https://CRAN.r-project.org/package=BayLum",
-      "description": "R package version 0.3.2.9000-59"
+      "description": "R package version 0.3.2.9000-61"
     },
     {
       "@type": "ScholarlyArticle",