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Update Phylogenetics.md
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Co-authored-by: William Gearty <[email protected]>
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thijsjanzen and willgearty authored Jan 30, 2024
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Expand Up @@ -133,7 +133,7 @@ Packages within the task view fall within one or more of the following task cate
- `r pkg("TreeSim")` can be used to simulate trees using constant-rate birth-death with various constraints.
- `r pkg("phytools")` can simulate birth-death trees with various constraints, in both continuous and discrete time.
- `r pkg("geiger")` can be used to simulate trees under a birth-death process.
- `r pkg("DDD")` can used to simulate trees under a diversity-dependent diversification process.
- `r pkg("DDD")` can be used to simulate trees under a diversity-dependent diversification process.
- `r pkg("paleotree")` can simulate fossil deposition, sampling, and the tree arising from this as well as trees conditioned on observed fossil taxa.
- `r pkg("FossilSim")` can be used to simulate fossil data on existing phylogenetic trees under mechanistic models of preservation and sampling.
- `r pkg("TESS")` can simulate trees with time-dependent speciation and/or extinction rates, including mass extinctions.
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