Skip to content

Commit

Permalink
fixing init conflict
Browse files Browse the repository at this point in the history
  • Loading branch information
aineniamh committed Oct 11, 2022
2 parents a4e4935 + 9e6ee9a commit fc146bb
Show file tree
Hide file tree
Showing 2 changed files with 43 additions and 6 deletions.
6 changes: 0 additions & 6 deletions .github/workflows/pangolin.yml
Original file line number Diff line number Diff line change
Expand Up @@ -55,11 +55,5 @@ jobs:
run: pangolin --verbose pangolin/test/test_seqs.fasta 2>&1 | tee pangolin_verbose.log
- name: Add assignment cache
run: pangolin --add-assignment-cache
- name: Test use-assignment-cache
run: pangolin --use-assignment-cache pangolin/test/test_seqs.fasta 2>&1 | grep 'Using pangolin-assignment cache'
- name: remove assignment cache
run: pip uninstall -y pangolin-assignment
- name: Add assignment cache to datadir
run: mkdir ac && pangolin --add-assignment-cache --datadir ac
- name: Test use-assignment-cache with datadir
run: pangolin --use-assignment-cache --datadir ac pangolin/test/test_seqs.fasta 2>&1 | grep 'Using pangolin-assignment cache'
43 changes: 43 additions & 0 deletions pangolin/data/data_compatibility.csv
Original file line number Diff line number Diff line change
@@ -0,0 +1,43 @@
data_source,version,min_pangolin_version,min_scorpio_version
pangolin-data,1.15.1,4,
pangolin-data,1.14,4,
pangolin-data,1.13,4,
pangolin-data,1.12,4,
pangolin-data,1.11,4,
pangolin-data,1.9,4,
pangolin-data,1.8,4,
pangolin-data,1.6,4,
pangolin-data,1.3,4,
pangolin-data,1.2.133,4,
pangolin-data,1.2.127,4,
pangolin-assignment,1.15.1,4,
pangolin-assignment,1.14,4,
pangolin-assignment,1.13,4,
pangolin-assignment,1.12,4,
pangolin-assignment,1.11,4,
pangolin-assignment,1.9,4,
pangolin-assignment,1.8,4,
pangolin-assignment,1.6,4,
pangolin-assignment,1.3,4,
pangolin-assignment,1.2.133,4,
constellations,0.1.10,,0.3.17
constellations,0.1.9,,0.3.17
constellations,0.1.8,,0.3.17
constellations,0.1.7,,0.3.17
constellations,0.1.6,,0.3.16
constellations,0.1.5,,0.3.16
constellations,0.1.4,,0.3.16
constellations,0.1.3,,0.3.16
constellations,0.1.2,,0.3.16
constellations,0.1.1,,0.3.16
constellations,0.1.0,,0.3.16
constellations,0.0.30,,0.3.14
constellations,0.0.29,,0.3.15
constellations,0.0.28,,0.3.15
constellations,0.0.27,,0.3.14
constellations,0.0.26,,0.3.14
constellations,0.0.25,,0.3.14
constellations,0.0.24,,0.3.14
constellations,0.0.23,,0.3.14
constellations,0.0.22,,0.3.14
constellations,0.0.21,,0.3.14

0 comments on commit fc146bb

Please sign in to comment.