Fix corrupted physio.json file

README

@@ -8,11 +8,11 @@ Participants watched episodes of first 6 seasons of the Friends TV series cut in
 This subdataset is organized following the [brain imaging data structure (BIDS)](https://bids.neuroimaging.io/) (including extensions in development) and contains:
 - [x] [raw neuroimaging data](https://docs.cneuromod.ca/en/latest/MRI.html#functional-sequences)
 - [x] behavioral variables in event files
-- [ ] physiological data
-  - [ ] ECG
-  - [ ] pulse (photoplethysmography)
-  - [ ] respiration
-  - [ ] skin conductance (electro-dermal activity)
+- [x] physiological data
+  - [x] ECG
+  - [x] pulse (photoplethysmography)
+  - [x] respiration
+  - [x] skin conductance (electro-dermal activity)
 - [ ] eyetracking gaze and pupillometry (some seasons/sessions only)
 
 *(unchecked are collected data which have not yet been integrated in the dataset)*

physio.json

@@ -0,0 +1,28 @@
+{
+  "StartTime": 9,
+  "SamplingFrequency": 10000,
+  "Columns": ["time", "EDA", "PPG", "ECG", "TTL", "RSP"],
+  "Manufacturer": "Biopac",
+  "ManufacturersModelName": "MP160",
+  "SofwareVersions": "Acqknowledge 5.0.4",
+  "DeviceSerialNumber": "1811A-0001F15",
+  "EDA": {
+    "Description": "continuous electrodermal measurement",
+    "Units": "AU"
+  },
+  "PPG": {
+    "Description": "continuous pulse measurement",
+    "Units": "V"
+  }, 
+  "ECG": {
+    "Description": "continuous electrocardiogram measurement",
+    "Units": "mV"
+  },
+  "TTL":{
+    "Description": "continuous measurement of the scanner trigger signal"
+  },
+  "RSP": {
+    "Description": "continuous measurements by respiration belt",
+    "Units": "cm H20"
+  }
+}

sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_bold.nii.gz

@@ -1 +1 @@
-../../../.git/annex/objects/1X/vV/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz/SHA256E-s507953949--17ec951e4c03673fa03d51474b796e69086a583ec2c247d804ce503e52f8106e.nii.gz
+../../../.git/annex/objects/Mg/25/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz/SHA256E-s518236862--22bbe4b35ccdb623bed7dd1bc3044891cb4092a41715ecd0e4f052db7b7adc82.nii.gz

sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_physio.json

@@ -0,0 +1,12 @@
+{
+    "SamplingFrequency": 10000.0,
+    "StartTime": 9.0002,
+    "Columns": [
+        "time",
+        "EDA",
+        "PPG",
+        "ECG",
+        "TTL",
+        "RSP"
+    ]
+}

sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_physio.tsv.gz

@@ -0,0 +1 @@
+../../../.git/annex/objects/7v/40/SHA256E-s90500966--7cec6bf90d110fad35ee76ccc2735b73b7f19be4321886b9be6b4bcb28c86f2d.tsv.gz/SHA256E-s90500966--7cec6bf90d110fad35ee76ccc2735b73b7f19be4321886b9be6b4bcb28c86f2d.tsv.gz

sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.json

@@ -1,7 +1,7 @@
 {
   "AcquisitionMatrixPE": 104,
   "AcquisitionNumber": 1,
-  "AcquisitionTime": "11:27:2.247500",
+  "AcquisitionTime": "11:00:43.490000",
   "BandwidthPerPixelPhaseEncode": 17.17,
   "BaseResolution": 104,
   "BodyPartExamined": "BRAIN",
@@ -43,29 +43,29 @@
   "PhaseResolution": 1,
   "PixelBandwidth": 2290,
   "ProcedureStepDescription": "video_friends",
-  "ProtocolName": "func_task-s01e02a",
+  "ProtocolName": "func_task-s01e01a",
   "PulseSequenceDetails": "%CustomerSeq%_cmrr_mbep2d_bold",
   "ReceiveCoilActiveElements": "HC1-7;NC1,2",
   "ReceiveCoilName": "HeadNeck_64",
   "ReconMatrixPE": 104,
   "RepetitionTime": 1.49,
-  "SAR": 0.0383981,
+  "SAR": 0.0384014,
   "ScanOptions": "FS",
   "ScanningSequence": "EP",
   "SequenceName": "epfid2d1_104",
   "SequenceVariant": "SK_SS",
-  "SeriesDescription": "func_task-s01e02a_SBRef",
-  "SeriesNumber": 13,
+  "SeriesDescription": "func_task-s01e01a_SBRef",
+  "SeriesNumber": 9,
   "ShimSetting": [639, -7202, -8827, 719, 124, -21, 1, -22],
   "SliceThickness": 2,
-  "SliceTiming": [0, 0.0975, 0.195, 0.2925, 0.39, 0.49, 0.5875, 0.685, 0.7825, 0.88, 0.98, 1.0775, 1.175, 1.2725, 1.37, 1.47, 1.5675, 1.665, 1.7625, 1.86, 1.96, 2.0575, 2.155, 2.2525, 2.35, 2.45, 2.5475, 2.645, 2.7425, 2.84, 2.94, 3.0375, 3.135, 3.2325, 3.33, 3.43, 3.5275, 3.625, 3.7225, 3.82, 3.9175, 4.0175, 4.115, 4.2125, 4.31, 4.4075, 4.5075, 4.605, 4.7025, 4.8, 4.8975, 4.9975, 5.095, 5.1925, 5.29, 5.3875, 5.4875, 5.585, 5.6825, 5.78],
+  "SliceTiming": [0, 0.1, 0.1975, 0.295, 0.3925, 0.49, 0.59, 0.6875, 0.785, 0.8825, 0.98, 1.08, 1.1775, 1.275, 1.3725, 1.47, 1.57, 1.6675, 1.765, 1.8625, 1.96, 2.06, 2.1575, 2.255, 2.3525, 2.45, 2.55, 2.6475, 2.745, 2.8425, 2.94, 3.04, 3.1375, 3.235, 3.3325, 3.43, 3.53, 3.6275, 3.725, 3.8225, 3.92, 4.02, 4.1175, 4.215, 4.3125, 4.41, 4.51, 4.6075, 4.705, 4.8025, 4.9, 4.9975, 5.0975, 5.195, 5.2925, 5.39, 5.4875, 5.5875, 5.685, 5.7825],
   "SoftwareVersions": "syngo_MR_E11",
   "SpacingBetweenSlices": 2,
   "StationName": "MRC35049",
   "TaskName": "friends",
   "TotalReadoutTime": 0.0576811,
   "TxRefAmp": 246.432,
-  "WipMemBlock": "60f8628f-854d-4bd2-9886-7dc40e156a62||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
+  "WipMemBlock": "bf900d47-d7d9-4fc8-8a39-1992f522e2af||Sequence: R016 ve11c/master r/e634e98; Dec 19 2017 11:00:25 by eja",
   "dcmmeta_affine": [
     [-1.9950048923492432, -0.08396422863006592, 0.11360155045986176, 105.41881561279297],
     [-0.1187247633934021, 1.8681559562683105, -0.7042001485824585, -62.526145935058594],
@@ -85,13 +85,13 @@
     "const": {
       "AcquisitionMatrix": [104, 0, 0, 104],
       "AcquisitionNumber": 1,
-      "AcquisitionTime": "112702.247500",
+      "AcquisitionTime": "110043.490000",
       "AngioFlag": "N",
       "BitsAllocated": 16,
       "BitsStored": 16,
       "BodyPartExamined": "BRAIN",
       "Columns": 832,
-      "ContentTime": "112839.155000",
+      "ContentTime": "110159.226000",
       "EchoNumbers": 1,
       "EchoTime": 37.0,
       "EchoTrainLength": 104,
@@ -107,11 +107,11 @@
         "MOSAIC"
 ],
       "ImagedNucleus": "1H",
-      "ImagingFrequency": 123.259145,
+      "ImagingFrequency": 123.259131,
       "InPlanePhaseEncodingDirection": "COL",
-      "InstanceCreationTime": "112839.155000",
+      "InstanceCreationTime": "110159.226000",
       "InstanceNumber": 1,
-      "LargestImagePixelValue": 57111,
+      "LargestImagePixelValue": 59821,
       "MRAcquisitionType": "2D",
       "MagneticFieldStrength": 3.0,
       "Manufacturer": "SIEMENS",
@@ -126,10 +126,10 @@
       "PixelBandwidth": 2290.0,
       "PixelRepresentation": 0,
       "PixelSpacing": [2.0, 2.0],
-      "ProtocolName": "func_task-s01e02a",
+      "ProtocolName": "func_task-s01e01a",
       "RepetitionTime": 1490.0,
       "Rows": 832,
-      "SAR": 0.03839806751426,
+      "SAR": 0.038401406525,
       "SamplesPerPixel": 1,
       "ScanOptions": "FS",
       "ScanningSequence": "EP",
@@ -138,9 +138,9 @@
         "SK",
         "SS"
 ],
-      "SeriesDescription": "func_task-s01e02a_SBRef",
-      "SeriesNumber": 13,
-      "SeriesTime": "112839.152000",
+      "SeriesDescription": "func_task-s01e01a_SBRef",
+      "SeriesNumber": 9,
+      "SeriesTime": "110159.223000",
       "SliceLocation": -34.499927506096,
       "SliceThickness": 2.0,
       "SmallestImagePixelValue": 0,
@@ -151,9 +151,9 @@
       "StudyTime": "102747.562000",
       "TransmitCoilName": "Body",
       "VariableFlipAngleFlag": "N",
-      "WindowCenter": 12218.0,
+      "WindowCenter": 12402.0,
       "WindowCenterWidthExplanation": "Algo1",
-      "WindowWidth": 25998.0,
+      "WindowWidth": 26499.0,
       "dBdt": 0.0},
     "slices": {}
   }

sub-01/ses-001/func/sub-01_ses-001_task-s01e02a_sbref.nii.gz

@@ -1 +1 @@
-../../../.git/annex/objects/F6/5Z/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz/SHA256E-s1103241--9ca6504d3f97862ca6d76b8c337e48cdc02e66855b09ca301bf8f0845929d93c.nii.gz
+../../../.git/annex/objects/ZQ/6g/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz/SHA256E-s1102565--24451eb366f8441752c905f5b891fe8776b4bdaff57df90fc3d7bedfff0a3a4c.nii.gz