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missing sessions #1

Merged
merged 54 commits into from
Aug 17, 2023
Merged

missing sessions #1

merged 54 commits into from
Aug 17, 2023

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bpinsard
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@bpinsard
update submodule
3a38f10
@bpinsard
[DATALAD] Recorded changes
e811fdd
@bpinsard
update submodule
899320e
@bpinsard
update submodule
b8bbb73
@bpinsard
update submodule
f30b109
@bpinsard
update containers
2fce4be
@bpinsard
Freeze container versions bids-fmriprep=20.2.6
b3688a2
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-01/ses-054
efb0ebf 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 01 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-01_ses-054_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-01/ses-054/fmap/",
  "sourcedata/friends/sub-01/ses-054/func/",
  "sourcedata/smriprep/sub-01/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-01/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-01/ses-064
57287ea 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 01 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-01_ses-064_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-01/ses-064/fmap/",
  "sourcedata/friends/sub-01/ses-064/func/",
  "sourcedata/smriprep/sub-01/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-01/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-037
5e19e55 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-037_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-037/fmap/",
  "sourcedata/friends/sub-05/ses-037/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-01/ses-058
2b45068 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 01 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-01_ses-058_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-01/ses-058/fmap/",
  "sourcedata/friends/sub-01/ses-058/func/",
  "sourcedata/smriprep/sub-01/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-01/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-03/ses-053
e1684f1 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 03 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-03_ses-053_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-03/ses-053/fmap/",
  "sourcedata/friends/sub-03/ses-053/func/",
  "sourcedata/smriprep/sub-03/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-03/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-038
dd94a9c 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-038_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-038/fmap/",
  "sourcedata/friends/sub-05/ses-038/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-06/ses-048
5783899 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 06 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-06_ses-048_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-06/ses-048/fmap/",
  "sourcedata/friends/sub-06/ses-048/func/",
  "sourcedata/smriprep/sub-06/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-06/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-041
6c22616 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-041_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-041/fmap/",
  "sourcedata/friends/sub-05/ses-041/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-036
35de5d1 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-036_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-036/fmap/",
  "sourcedata/friends/sub-05/ses-036/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-033
b4660c5 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-033_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-033/fmap/",
  "sourcedata/friends/sub-05/ses-033/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-03/ses-080
9cfd57d 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 03 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-03_ses-080_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-03/ses-080/fmap/",
  "sourcedata/friends/sub-03/ses-080/func/",
  "sourcedata/smriprep/sub-03/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-03/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-035
83d6411 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-035_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-035/fmap/",
  "sourcedata/friends/sub-05/ses-035/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-039
8f6ab19 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-039_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-039/fmap/",
  "sourcedata/friends/sub-05/ses-039/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-034
301e4c4 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-034_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-034/fmap/",
  "sourcedata/friends/sub-05/ses-034/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
[DATALAD RUNCMD] fMRIPrep_sub-05/ses-040
e51d887 
=== Do not change lines below ===
{
 "chain": [],
 "cmd": "./containers/scripts/singularity_cmd run containers/images/bids/bids-fmriprep--20.2.6.sing -w ./workdir --participant-label 05 --anat-derivatives ./sourcedata/smriprep --fs-subjects-dir ./sourcedata/smriprep/sourcedata/freesurfer --bids-filter-file code/fmriprep_study-friends_sub-05_ses-040_bids_filters.json --output-layout bids --ignore slicetiming --use-syn-sdc --output-spaces MNI152NLin2009cAsym T1w:res-iso2mm --cifti-output 91k --notrack --write-graph --skip_bids_validation --omp-nthreads 8 --nprocs 12 --mem_mb 49152 --fs-license-file code/freesurfer.license sourcedata/friends ./ participant",
 "dsid": "cbfd6482-5670-4f39-ba1b-9623f1f460b8",
 "exit": 0,
 "extra_inputs": [
  "containers/images/bids/bids-fmriprep--20.2.6.sing"
 ],
 "inputs": [
  "sourcedata/templateflow/tpl-MNI152NLin2009cAsym/",
  "sourcedata/templateflow/tpl-OASIS30ANTs/",
  "sourcedata/templateflow/tpl-fsLR/",
  "sourcedata/templateflow/tpl-fsaverage/",
  "sourcedata/templateflow/tpl-MNI152NLin6Asym/",
  "sourcedata/friends/sub-05/ses-040/fmap/",
  "sourcedata/friends/sub-05/ses-040/func/",
  "sourcedata/smriprep/sub-05/anat/",
  "sourcedata/smriprep/sourcedata/freesurfer/fsaverage/",
  "sourcedata/smriprep/sourcedata/freesurfer/sub-05/"
 ],
 "outputs": [
  "."
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
@bpinsard
update scripts and containers
2e633d4
@bpinsard
append session entity to report to avoid name collision
b383056
@bpinsard
append session entity to report to avoid name collision
891896b
@bpinsard
append session entity to report to avoid name collision
e1bd35c
@bpinsard
append session entity to report to avoid name collision
9042458
@bpinsard
append session entity to report to avoid name collision
e4c2f61
@bpinsard
append session entity to report to avoid name collision
f2b862d
@bpinsard
append session entity to report to avoid name collision
867cba3
@bpinsard
Merge branch 'fmriprep_study-friends_sub-03_ses-053.job' into rel/2022
bb93fad
@bpinsard
Merge branch 'fmriprep_study-friends_sub-03_ses-080.job' into rel/2022
5ea4ff5
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-033.job' into rel/2022
6d98c47
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-034.job' into rel/2022
fa7e98c
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-035.job' into rel/2022
f674257
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-036.job' into rel/2022
5dd68c8
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-037.job' into rel/2022
5752e2e
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-038.job' into rel/2022
95ff5a3
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-039.job' into rel/2022
11ea8fd
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-040.job' into rel/2022
597aa0b
@bpinsard
Merge branch 'fmriprep_study-friends_sub-05_ses-041.job' into rel/2022
fda12e1
@bpinsard
Merge branch 'fmriprep_study-friends_sub-06_ses-048.job' into rel/2022
8868a90
@bpinsard
reset templateflow for tests to pass, files are the same
8d1d55f
@bpinsard bpinsard merged commit 9226e44 into main Aug 17, 2023
1 check passed
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "2bbac4a6e4…
e255943 
…3379e82571101e8586fbd5ee2e55c1" but found [Ref "1aadd1e22a4aeda30d26179aa484a6a36f865dd0"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "c26a0adbcf…
b39e54f 
…aaa04c774a518b6bf51ac95ad3ebf3" but found [Ref "a7c81dbe3fefdd10702dda86fed8afec6aa5100a"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "8c53258310…
ba6362a 
…e9107f6e25408a23633e9aad2d654a" but found [Ref "a767c560e0ad46849135c4440642af9658c2d579"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "79be2bef75…
bbfd64d 
…759df39c77dcac1073d5024a3d0fc8" but found [Ref "78a2b467c235cad1468c26e2fbd49bbecbd05afe"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "c6d5ed41ea…
c54dbdb 
…68781d29b97eb5e2869b0909a7cb29" but found [Ref "59bd7a18680b80da910836db273bd531d9cd23d3"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "f672fff0fa…
ec4e1e1 
…82dbcc94fc8c40704388611931c4ce" but found [Ref "82debc46f749d30dc70f100f183ba4626e96318a"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "117799ea87…
5d5cc5e 
…740036f6d5aa8e7146ecd51f6e4f89" but found [Ref "31b9b8199faed88699b6677260cd3f199e8998b4"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "a66769f65a…
2faa876 
…33b25bbd922ed20589511990695f97" but found [Ref "790c1bb2abcc2364829b7e1cf209352f3ba1a67d"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "4f3708ea67…
d335c15 
…07ffb5f33625b12bdf4cac0de531a1" but found [Ref "b58707da6754f4d3c074c755bea21df210df2d37"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "e8801d0e41…
19b4dd9 
…2c44ab165927a1554de0a6a23d29da" but found [Ref "4a19a7bd784f150262987cd4ae7789df67f8c794"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "cef038a314…
cd7c7ad 
…fbdc28be901d7429a0aaae3779a249" but found [Ref "663efce32163d4ea8c9eb8a8c8eadc382b633d30"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "706f3b1b79…
5c74039 
…81a375f61ba372fe903078f88e6a6a" but found [Ref "06c2fa5687ffd81cffdcc5727115782f3d99ce34"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "0d16df0641…
4b850d4 
…994861c4131f9185f8fa3b7d43b29e" but found [Ref "eae36bfcb333c9adc1d0a23951b1de61502159fc"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "0d84af841d…
8b6ad2c 
…9a2f25ed9eb28afa4a25bb14dd630b" but found [Ref "dea12b1d8df99f9b777f23d65c085e36afc44545"] )
bpinsard added a commit that referenced this pull request Jul 31, 2024
@bpinsard
update (recovery from race #1; expected commit parent Ref "461a751e9d…
7e12306 
…f409aac12cb5dc1f6d22bf7c4b2998" but found [Ref "9bbd5db6a97dbe585adfa0438178892181e46ba8"] )
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@bpinsard