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- close example block
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fbergmann committed Jan 17, 2024
1 parent 8f5cc2f commit 2933e7f
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7 changes: 7 additions & 0 deletions src/copasijs.h
Original file line number Diff line number Diff line change
Expand Up @@ -126,6 +126,7 @@ void reset();
/// }
/// }
/// ```
///
/// where `name` would be the display name of the element to change. If no
/// specific reference is used, the initial concentration will be changed
/// for species, and initial values for all other model entities.
Expand Down Expand Up @@ -167,6 +168,7 @@ double steadyState();
/// ]
/// }
/// ```
///
std::string simulateYaml(const std::string& processingYaml);

/// @brief runs a simulation and returns the result as json string
Expand Down Expand Up @@ -194,6 +196,7 @@ std::string simulateYaml(const std::string& processingYaml);
/// ]
/// }
/// ```
///
std::string simulate();

/// @brief runs a simulation and returns the result as json string
Expand All @@ -220,6 +223,7 @@ std::string simulate();
/// ]
/// }
/// ```
///
std::string simulateEx(double timeStart, double timeEnd, int numPoints);

/// @brief runs a simulation for one outputstep
Expand Down Expand Up @@ -256,6 +260,8 @@ double oneStep(double startTime, double stepSize);
/// "Max Internal Step Size": 0.0,
/// "name": "Deterministic (LSODA)"
/// }
/// ```
///
std::string getTimeCourseSettings();

/// @brief sets the time course settings from a json string
Expand Down Expand Up @@ -375,6 +381,7 @@ void loadCommon();
/// ]
/// }
/// ```
///
std::string simulateJSON(nlohmann::ordered_json& yaml);
#pragma endregion

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