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const-ae committed Dec 2, 2024
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Expand Up @@ -10,17 +10,22 @@ and this project adheres to [Semantic Versioning][].

## [Unreleased]

## [0.3.0]

- Depend on `formulaic_contrast` package
- Refactor `cond()` implementation to use `formulaic_contrast` implementation.

## [0.2.2]

- Sync with cookiecutter-template update (version 0.4)
- Bump required Python version to `3.10`
- Allow data frames as design matrices
- Allow matrices as input to LEMUR()
- Sync with cookiecutter-template update (version 0.4)
- Bump required Python version to `3.10`
- Allow data frames as design matrices
- Allow matrices as input to LEMUR()

## [0.2.1]

- Change example gene to one with clearer differential expression pattern
- Remove error output in `align_harmony
- Change example gene to one with clearer differential expression pattern
- Remove error output in `align_harmony

## [0.2.0]

Expand All @@ -32,10 +37,10 @@ during the submission to the `scverse` ecosystem.

### Changed

- Instead of calling `fit = pylemur.tl.lemur(adata, ...)`, you now create a LEMUR model
(`model = pylemur.tl.LEMUR(adata, ...)`) and subsequently call `model.fit()`, `model.align_with_harmony()`,
and `model.predict()`.
- Instead of calling `fit = pylemur.tl.lemur(adata, ...)`, you now create a LEMUR model
(`model = pylemur.tl.LEMUR(adata, ...)`) and subsequently call `model.fit()`, `model.align_with_harmony()`,
and `model.predict()`.

## [0.1.0] - 2024-03-21

- Initial beta release of `pyLemur`
- Initial beta release of `pyLemur`

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