deploy: 2d9908d

commons-research · Aug 26, 2023 · 5b3996b · 5b3996b
commit 5b3996b
Show file tree

Hide file tree

Showing 1,076 changed files with 36,836 additions and 0 deletions.
diff --git a/.nojekyll b/.nojekyll
diff --git a/404/index.html b/404/index.html
diff --git a/500/index.html b/500/index.html
diff --git a/_next/data/fuzLTXz2s6Jwew8janCcy/404.json b/_next/data/fuzLTXz2s6Jwew8janCcy/404.json
diff --git a/_next/data/fuzLTXz2s6Jwew8janCcy/500.json b/_next/data/fuzLTXz2s6Jwew8janCcy/500.json
diff --git a/_next/data/fuzLTXz2s6Jwew8janCcy/index.json b/_next/data/fuzLTXz2s6Jwew8janCcy/index.json
diff --git a/_next/data/fuzLTXz2s6Jwew8janCcy/notes/00cxvanmyir17hyji7shg07.json b/_next/data/fuzLTXz2s6Jwew8janCcy/notes/00cxvanmyir17hyji7shg07.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"open-notebook.commons.sguetchueng.2023","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1693054348172,"created":1693054348172,"id":"00cxvanmyir17hyji7shg07","desc":"","links":[],"anchors":{},"children":["wf7ac93yoozs0nu61y59121","ve41yg3kmbc71f7ubh55lsl"],"parent":"8fl3lg9qbw61pplcff4vpi6","data":{},"title":"2023"},"body":"<h1 id=\"2023\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#2023\"></a>2023</h1>\n<hr>\n<strong>Children</strong>\n<ol>\n<li><a href=\"/commons-dws-public/notes/wf7ac93yoozs0nu61y59121\">02</a></li>\n<li><a href=\"/commons-dws-public/notes/ve41yg3kmbc71f7ubh55lsl\">03</a></li>\n</ol>","noteIndex":{"id":"QvYK9hGbCvPpEfSRYhV8j","title":"Welcome to the COMMONS Lab Open Dendron","desc":"","updated":1693054200250,"created":1630130450048,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"09bbb71947d751d2bba29ad34424f0c3","links":[{"type":"wiki","from":{"fname":"root","id":"QvYK9hGbCvPpEfSRYhV8j","vaultName":"vault"},"value":"open-notebook.commons.setup","position":{"start":{"line":43,"column":118,"offset":1829},"end":{"line":43,"column":149,"offset":1860},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.commons.setup"}}],"anchors":{"commons-lab-open-dendron":{"type":"header","text":"COMMONS Lab Open Dendron","value":"commons-lab-open-dendron","line":8,"column":0,"depth":1},"what-is-this-note":{"type":"header","text":"What is this note","value":"what-is-this-note","line":16,"column":0,"depth":2},"tutorial":{"type":"header","text":"Tutorial","value":"tutorial","line":20,"column":0,"depth":2},"dendron":{"type":"header","text":"Dendron.","value":"dendron","line":22,"column":0,"depth":3},"what-is-dendron-":{"type":"header","text":"What is Dendron ?","value":"what-is-dendron-","line":24,"column":0,"depth":4},"where-to-get-more-info-on-dendron-":{"type":"header","text":"Where to get more info on Dendron ?","value":"where-to-get-more-info-on-dendron-","line":30,"column":0,"depth":4},"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron":{"type":"header","text":"Concrete steps to access and contribute to the DBGI Dendron","value":"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron","line":35,"column":0,"depth":4},"questions-comments-suggestions-":{"type":"header","text":"Questions, comments, suggestions ?","value":"questions-comments-suggestions-","line":52,"column":0,"depth":2}},"children":["e4ul30admmxm9ilxfq275cq","6ooxuf27zzf3grb14o18qf2","ih6vyup3yre4m9woc9ldl7k","vDTgZL9UHWqYtBFdtD3vK","jldFUSJGjDf1mFH8c2yUI","2rvdf4t5qnx5hqjj29bojcc","gvdyfgvq0z08fcfaqzmhtjo","46d1odkovrpdi6g16992phy","hpnaglyhnb48vuiniqecnqf","2cxr093kvrg4jojokwgqrbj","w75krbmkkvla3hwd66hn5bh","t22kyc0u219zttxwumy1mz4","1FrTCjiR1fQPBTJNRsbyy","q0njjp0rqest1n2fdjgq0k6","43p60vv8btyhaclugl93jok","wj0i9czxvt4v0b674nb8501","ovslc641d0h00s16tf6kl8w","59ftsVxFXXM9bB43vfKwK","nmnpsy2e1rwqnqgurogi2u6","7xb7yk2y8q8j7pz6hqzus6x","i2wwyz5i34u46kkh81zsa0q","0ofr8ecwwytev3b2cmxr1m4","ys06njntxsjb0fkp0c54vqm","3jd7opuqptna5e6lfq7fz35","01rszsuuubdipcnjfsyq1wu","qsqxf6gl8ifspe1awi3ar8r","pa0rrq9t3rykkhz1mhc464p"],"parent":null,"data":{},"body":"\n# COMMONS Lab Open Dendron\n\nWelcome the the COMMONS Lab Open Dendron.\n\nIn the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.\n\nFor this we use the Dendron system as a mean to efficiently capture notes and publish them.\n\n## What is this note\n\nThis note is a succinct tutorial note aiming to get you started in the use of the DBGI Dendron.\n\n## Tutorial\n\n### Dendron. \n\n#### What is Dendron ?\n\n> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.\n> \n> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.\n\n#### Where to get more info on Dendron ?\n\n- You can get more information in the Dendron system at the official website www.dendron.so\n- All the Dendron documentation is hosted here https://wiki.dendron.so/ . It is, obviously, a Dendron itself.\n\n#### Concrete steps to access and contribute to the DBGI Dendron\n\n1. Install [VSCode](https://code.visualstudio.com/download)\n2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace \n3. Clone the COMMONS Dendron repo\n\n    In your terminal\n    ```\n    git clone https://github.com/commons-research/commons-dws-public.git\n    ```\n4. In VSCode open (File/Open) the cloned repository.\n5. Voila ! You should now be in the COMMONS Lab Open Dendron.\n\nFeel free to explore and contribute.\nA first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]\n\n\n## Questions, comments, suggestions ?\n\nFeel free to contribute here https://github.com/orgs/commons-research/discussions\n\n"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":false,"leaveTrace":false,"bubbleUpCreateNew":true,"vaultSelectionModeOnCreate":"smart","fuzzThreshold":0.2}},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"randomNote":{},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"maxPreviewsCached":10,"maxNoteLength":204800,"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"enableUserTags":true,"enableHashTags":true,"dendronVersion":"0.112.0","enableEditorDecorations":true,"enableFullHierarchyNoteTitle":false},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"assetsPrefix":"/commons-dws-public","copyAssets":true,"siteHierarchies":["root"],"enableSiteLastModified":true,"siteRootDir":"docs","siteUrl":"https://commons-research.github.io","enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"writeStubs":false,"seo":{"title":"COMMONS DWS Public","description":"Personal knowledge space"},"github":{"enableEditLink":true,"editLinkText":"Click here to edit this page on Github !","editBranch":"main","editViewMode":"edit","editRepository":"https://github.com/commons-research/commons-dws-public"},"enablePrettyLinks":true,"enableTaskNotes":true,"siteFaviconPath":"favicon.ico","siteIndex":"root","searchMode":"lookup"}}},"__N_SSG":true}
diff --git a/_next/data/fuzLTXz2s6Jwew8janCcy/notes/01rszsuuubdipcnjfsyq1wu.json b/_next/data/fuzLTXz2s6Jwew8janCcy/notes/01rszsuuubdipcnjfsyq1wu.json
@@ -0,0 +1 @@
+{"pageProps":{"note":{"fname":"meetings","stub":true,"vault":{"fsPath":"vault"},"schemaStub":false,"type":"note","updated":1693054348155,"created":1693054348155,"id":"01rszsuuubdipcnjfsyq1wu","desc":"","links":[],"anchors":{},"children":["lc6fy1w99cvxifoe1vfatwh"],"parent":"QvYK9hGbCvPpEfSRYhV8j","data":{},"title":"Meetings"},"body":"<h1 id=\"meetings\"><a aria-hidden=\"true\" class=\"anchor-heading icon-link\" href=\"#meetings\"></a>Meetings</h1>\n<hr>\n<strong>Children</strong>\n<ol>\n<li><a href=\"/commons-dws-public/notes/lc6fy1w99cvxifoe1vfatwh\">Group Meetings</a></li>\n</ol>","noteIndex":{"id":"QvYK9hGbCvPpEfSRYhV8j","title":"Welcome to the COMMONS Lab Open Dendron","desc":"","updated":1693054200250,"created":1630130450048,"custom":{"nav_order":0,"permalink":"/"},"fname":"root","type":"note","vault":{"fsPath":"vault"},"contentHash":"09bbb71947d751d2bba29ad34424f0c3","links":[{"type":"wiki","from":{"fname":"root","id":"QvYK9hGbCvPpEfSRYhV8j","vaultName":"vault"},"value":"open-notebook.commons.setup","position":{"start":{"line":43,"column":118,"offset":1829},"end":{"line":43,"column":149,"offset":1860},"indent":[]},"xvault":false,"sameFile":false,"to":{"fname":"open-notebook.commons.setup"}}],"anchors":{"commons-lab-open-dendron":{"type":"header","text":"COMMONS Lab Open Dendron","value":"commons-lab-open-dendron","line":8,"column":0,"depth":1},"what-is-this-note":{"type":"header","text":"What is this note","value":"what-is-this-note","line":16,"column":0,"depth":2},"tutorial":{"type":"header","text":"Tutorial","value":"tutorial","line":20,"column":0,"depth":2},"dendron":{"type":"header","text":"Dendron.","value":"dendron","line":22,"column":0,"depth":3},"what-is-dendron-":{"type":"header","text":"What is Dendron ?","value":"what-is-dendron-","line":24,"column":0,"depth":4},"where-to-get-more-info-on-dendron-":{"type":"header","text":"Where to get more info on Dendron ?","value":"where-to-get-more-info-on-dendron-","line":30,"column":0,"depth":4},"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron":{"type":"header","text":"Concrete steps to access and contribute to the DBGI Dendron","value":"concrete-steps-to-access-and-contribute-to-the-dbgi-dendron","line":35,"column":0,"depth":4},"questions-comments-suggestions-":{"type":"header","text":"Questions, comments, suggestions ?","value":"questions-comments-suggestions-","line":52,"column":0,"depth":2}},"children":["e4ul30admmxm9ilxfq275cq","6ooxuf27zzf3grb14o18qf2","ih6vyup3yre4m9woc9ldl7k","vDTgZL9UHWqYtBFdtD3vK","jldFUSJGjDf1mFH8c2yUI","2rvdf4t5qnx5hqjj29bojcc","gvdyfgvq0z08fcfaqzmhtjo","46d1odkovrpdi6g16992phy","hpnaglyhnb48vuiniqecnqf","2cxr093kvrg4jojokwgqrbj","w75krbmkkvla3hwd66hn5bh","t22kyc0u219zttxwumy1mz4","1FrTCjiR1fQPBTJNRsbyy","q0njjp0rqest1n2fdjgq0k6","43p60vv8btyhaclugl93jok","wj0i9czxvt4v0b674nb8501","ovslc641d0h00s16tf6kl8w","59ftsVxFXXM9bB43vfKwK","nmnpsy2e1rwqnqgurogi2u6","7xb7yk2y8q8j7pz6hqzus6x","i2wwyz5i34u46kkh81zsa0q","0ofr8ecwwytev3b2cmxr1m4","ys06njntxsjb0fkp0c54vqm","3jd7opuqptna5e6lfq7fz35","01rszsuuubdipcnjfsyq1wu","qsqxf6gl8ifspe1awi3ar8r","pa0rrq9t3rykkhz1mhc464p"],"parent":null,"data":{},"body":"\n# COMMONS Lab Open Dendron\n\nWelcome the the COMMONS Lab Open Dendron.\n\nIn the [COMMONS Lab](https://www.unifr.ch/bio/en/groups/allard/) we intent to follow the [Open Notebook Science](https://en.wikipedia.org/wiki/Open-notebook_science) approach to document our research.\n\nFor this we use the Dendron system as a mean to efficiently capture notes and publish them.\n\n## What is this note\n\nThis note is a succinct tutorial note aiming to get you started in the use of the DBGI Dendron.\n\n## Tutorial\n\n### Dendron. \n\n#### What is Dendron ?\n\n> Dendron is an open-source, local-first, markdown-based, note-taking tool. Think of it as a cache for everything that you care about - if you've spent more then five minutes solving a problem, you should never spent any more time solving the same exact problem.\n> \n> Dendron is a knowledge base built by and for developers and integrates natively with IDEs like VS Code and VSCodium.\n\n#### Where to get more info on Dendron ?\n\n- You can get more information in the Dendron system at the official website www.dendron.so\n- All the Dendron documentation is hosted here https://wiki.dendron.so/ . It is, obviously, a Dendron itself.\n\n#### Concrete steps to access and contribute to the DBGI Dendron\n\n1. Install [VSCode](https://code.visualstudio.com/download)\n2. Install [Dendron](https://marketplace.visualstudio.com/items?itemName=dendron.dendron) from the VSCode marketplace \n3. Clone the COMMONS Dendron repo\n\n    In your terminal\n    ```\n    git clone https://github.com/commons-research/commons-dws-public.git\n    ```\n4. In VSCode open (File/Open) the cloned repository.\n5. Voila ! You should now be in the COMMONS Lab Open Dendron.\n\nFeel free to explore and contribute.\nA first, important step could be to configure VSCode so that you can easily add a daily note. See steps described at [[open-notebook.commons.setup]]\n\n\n## Questions, comments, suggestions ?\n\nFeel free to contribute here https://github.com/orgs/commons-research/discussions\n\n"},"collectionChildren":null,"customHeadContent":null,"config":{"version":5,"dev":{"enablePreviewV2":true},"commands":{"lookup":{"note":{"selectionMode":"extract","confirmVaultOnCreate":false,"leaveTrace":false,"bubbleUpCreateNew":true,"vaultSelectionModeOnCreate":"smart","fuzzThreshold":0.2}},"insertNote":{"initialValue":"templates"},"insertNoteLink":{"aliasMode":"none","enableMultiSelect":false},"insertNoteIndex":{"enableMarker":false},"randomNote":{},"copyNoteLink":{"aliasMode":"title"},"templateHierarchy":"template"},"workspace":{"vaults":[{"fsPath":"vault"}],"journal":{"dailyDomain":"daily","name":"journal","dateFormat":"y.MM.dd","addBehavior":"childOfDomain"},"scratch":{"name":"scratch","dateFormat":"y.MM.dd.HHmmss","addBehavior":"asOwnDomain"},"graph":{"zoomSpeed":1,"createStub":false},"enableAutoCreateOnDefinition":false,"enableXVaultWikiLink":false,"enableRemoteVaultInit":true,"workspaceVaultSyncMode":"noCommit","enableAutoFoldFrontmatter":false,"maxPreviewsCached":10,"maxNoteLength":204800,"task":{"name":"","dateFormat":"","addBehavior":"childOfCurrent","statusSymbols":{"":" ","wip":"w","done":"x","assigned":"a","moved":"m","blocked":"b","delegated":"l","dropped":"d","pending":"y"},"prioritySymbols":{"H":"high","M":"medium","L":"low"},"todoIntegration":false,"createTaskSelectionType":"selection2link","taskCompleteStatus":["done","x"]},"enableUserTags":true,"enableHashTags":true,"dendronVersion":"0.112.0","enableEditorDecorations":true,"enableFullHierarchyNoteTitle":false},"preview":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"automaticallyShowPreview":false,"enableFrontmatterTags":true,"enableHashesForFMTags":false},"publishing":{"enableFMTitle":true,"enableNoteTitleForLink":true,"enableMermaid":true,"enablePrettyRefs":true,"enableKatex":true,"assetsPrefix":"/commons-dws-public","copyAssets":true,"siteHierarchies":["root"],"enableSiteLastModified":true,"siteRootDir":"docs","siteUrl":"https://commons-research.github.io","enableFrontmatterTags":true,"enableHashesForFMTags":false,"enableRandomlyColoredTags":true,"duplicateNoteBehavior":{"action":"useVault","payload":["vault"]},"writeStubs":false,"seo":{"title":"COMMONS DWS Public","description":"Personal knowledge space"},"github":{"enableEditLink":true,"editLinkText":"Click here to edit this page on Github !","editBranch":"main","editViewMode":"edit","editRepository":"https://github.com/commons-research/commons-dws-public"},"enablePrettyLinks":true,"enableTaskNotes":true,"siteFaviconPath":"favicon.ico","siteIndex":"root","searchMode":"lookup"}}},"__N_SSG":true}