Skip to content
@collaborativebioinformatics

collaborativebioinformatics

Popular repositories Loading

  1. STRdust STRdust Public

    Python 13 3

  2. Sniphles Sniphles Public

    Sniphles is a read-based phasing approach for phased variant calling of structural variants.

    Python 12 2

  3. GeneVar GeneVar Public

    Jupyter Notebook 12 3

  4. nibSV nibSV Public

    Nim 9 4

  5. Disease_subsetting Disease_subsetting Public

    Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis

    Jupyter Notebook 9 2

  6. GeneVar2 GeneVar2 Public

    R 8 6

Repositories

Showing 10 of 88 repositories
  • Mimic Public

    Generates simulated ONT metegenomic samples based off existing microbiome sample abundances

    collaborativebioinformatics/Mimic’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 12, 2024
  • Haploblock_Clusters Public
    collaborativebioinformatics/Haploblock_Clusters’s past year of commit activity
    Jupyter Notebook 1 MIT 2 0 0 Updated Sep 5, 2024
  • AMRdiscover Public
    collaborativebioinformatics/AMRdiscover’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Sep 2, 2024
  • starfishDiscovery Public
    collaborativebioinformatics/starfishDiscovery’s past year of commit activity
    R 1 MIT 3 0 1 Updated Aug 30, 2024
  • MoVana Public
    collaborativebioinformatics/MoVana’s past year of commit activity
    WDL 0 MIT 0 0 0 Updated Aug 30, 2024
  • SVeedy Public
    collaborativebioinformatics/SVeedy’s past year of commit activity
    R 2 MIT 4 0 0 Updated Aug 30, 2024
  • SpikeVarTykeVar Public
    collaborativebioinformatics/SpikeVarTykeVar’s past year of commit activity
    Python 8 MIT 5 0 0 Updated Aug 30, 2024
  • tandemrepeats Public

    Tandem Repeats Team -- 2024 SVCC Hackathon

    collaborativebioinformatics/tandemrepeats’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 30, 2024
  • LLM_SVs Public
    collaborativebioinformatics/LLM_SVs’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 29, 2024
  • PIBP Public
    collaborativebioinformatics/PIBP’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 24, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…