Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

fix: broken epix_merge operations #174

Merged
merged 3 commits into from
Mar 3, 2025
Merged

Conversation

dshemetov
Copy link
Contributor

@dshemetov dshemetov commented Mar 1, 2025

For some reason, joined_archive_data was completely incorrect after epix_merge. I dug into it with Logan and found that dplyr operations are extremely dangerous when mixed with data.table. The fix is to make sure to call as.data.frame() before calling as_epi_archive(), any time you work with dplyr ops on an archive's DT. There were also a couple other scoring and plotting things that needed to be fixed.

TODO:

  • tweak notebook
  • whiten google symptoms after merge

address #173

@dshemetov dshemetov requested a review from dsweber2 March 1, 2025 02:28
@@ -1,489 +0,0 @@
---
title: Evaluation of Hospitalization Forecasters 2024-2025
Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is an old version of a comparison notebook that now lives in /scripts/reports. Removing this minimize maintenance surface.

@dshemetov dshemetov merged commit 8ab8e89 into main Mar 3, 2025
1 check failed
@dshemetov dshemetov deleted the ds/hotfix_covid_explore branch March 3, 2025 20:54
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants