Add specialized epix_slide for epi_slide_opt

DESCRIPTION

@@ -97,6 +97,8 @@ Collate:
     'correlation.R'
     'epi_df.R'
     'epi_df_forbidden_methods.R'
+    'epi_slide_opt_archive.R'
+    'epi_slide_opt_edf.R'
     'epiprocess-package.R'
     'group_by_epi_df_methods.R'
     'methods-epi_archive.R'
@@ -105,6 +107,7 @@ Collate:
     'key_colnames.R'
     'methods-epi_df.R'
     'outliers.R'
+    'patch.R'
     'reexports.R'
     'revision_analysis.R'
     'slide.R'

NAMESPACE

@@ -27,6 +27,9 @@ S3method(dplyr_col_modify,col_modify_recorder_df)
 S3method(dplyr_col_modify,epi_df)
 S3method(dplyr_reconstruct,epi_df)
 S3method(dplyr_row_slice,epi_df)
+S3method(epi_slide_opt,epi_archive)
+S3method(epi_slide_opt,epi_df)
+S3method(epi_slide_opt,grouped_epi_archive)
 S3method(epix_slide,epi_archive)
 S3method(epix_slide,grouped_epi_archive)
 S3method(epix_truncate_versions_after,epi_archive)
@@ -101,6 +104,7 @@ export(time_column_names)
 export(ungroup)
 export(unnest)
 export(validate_epi_archive)
+export(vec_approx_equal)
 export(version_column_names)
 import(epidatasets)
 importFrom(checkmate,anyInfinite)
@@ -117,13 +121,19 @@ importFrom(checkmate,assert_logical)
 importFrom(checkmate,assert_number)
 importFrom(checkmate,assert_numeric)
 importFrom(checkmate,assert_scalar)
+importFrom(checkmate,assert_set_equal)
 importFrom(checkmate,assert_string)
 importFrom(checkmate,assert_subset)
 importFrom(checkmate,assert_tibble)
+importFrom(checkmate,assert_true)
 importFrom(checkmate,checkInt)
 importFrom(checkmate,check_atomic)
+importFrom(checkmate,check_character)
 importFrom(checkmate,check_data_frame)
+importFrom(checkmate,check_logical)
 importFrom(checkmate,check_names)
+importFrom(checkmate,check_null)
+importFrom(checkmate,check_numeric)
 importFrom(checkmate,expect_class)
 importFrom(checkmate,test_int)
 importFrom(checkmate,test_set_equal)
@@ -143,6 +153,7 @@ importFrom(data.table,address)
 importFrom(data.table,as.data.table)
 importFrom(data.table,between)
 importFrom(data.table,copy)
+importFrom(data.table,fifelse)
 importFrom(data.table,frollapply)
 importFrom(data.table,frollmean)
 importFrom(data.table,frollsum)
@@ -151,6 +162,8 @@ importFrom(data.table,key)
 importFrom(data.table,rbindlist)
 importFrom(data.table,set)
 importFrom(data.table,setDF)
+importFrom(data.table,setDT)
+importFrom(data.table,setcolorder)
 importFrom(data.table,setkeyv)
 importFrom(dplyr,"%>%")
 importFrom(dplyr,across)
@@ -173,8 +186,8 @@ importFrom(dplyr,if_all)
 importFrom(dplyr,if_any)
 importFrom(dplyr,if_else)
 importFrom(dplyr,is_grouped_df)
-importFrom(dplyr,lag)
 importFrom(dplyr,mutate)
+importFrom(dplyr,n_groups)
 importFrom(dplyr,pick)
 importFrom(dplyr,pull)
 importFrom(dplyr,relocate)
@@ -200,6 +213,7 @@ importFrom(rlang,"%||%")
 importFrom(rlang,.data)
 importFrom(rlang,.env)
 importFrom(rlang,arg_match)
+importFrom(rlang,arg_match0)
 importFrom(rlang,caller_arg)
 importFrom(rlang,caller_env)
 importFrom(rlang,check_dots_empty)
@@ -212,6 +226,7 @@ importFrom(rlang,expr_label)
 importFrom(rlang,f_env)
 importFrom(rlang,f_rhs)
 importFrom(rlang,is_bare_integerish)
+importFrom(rlang,is_bare_list)
 importFrom(rlang,is_bare_numeric)
 importFrom(rlang,is_environment)
 importFrom(rlang,is_formula)
@@ -235,10 +250,12 @@ importFrom(slider,slide_sum)
 importFrom(stats,cor)
 importFrom(stats,median)
 importFrom(tibble,as_tibble)
+importFrom(tibble,is_tibble)
 importFrom(tibble,new_tibble)
 importFrom(tibble,validate_tibble)
 importFrom(tidyr,complete)
 importFrom(tidyr,full_seq)
+importFrom(tidyr,nest)
 importFrom(tidyr,unnest)
 importFrom(tidyselect,any_of)
 importFrom(tidyselect,eval_select)
@@ -248,15 +265,24 @@ importFrom(tsibble,as_tsibble)
 importFrom(utils,capture.output)
 importFrom(utils,tail)
 importFrom(vctrs,"vec_slice<-")
+importFrom(vctrs,obj_is_vector)
 importFrom(vctrs,vec_cast)
+importFrom(vctrs,vec_cast_common)
 importFrom(vctrs,vec_data)
 importFrom(vctrs,vec_duplicate_any)
+importFrom(vctrs,vec_duplicate_id)
 importFrom(vctrs,vec_equal)
 importFrom(vctrs,vec_in)
+importFrom(vctrs,vec_match)
 importFrom(vctrs,vec_order)
+importFrom(vctrs,vec_ptype)
 importFrom(vctrs,vec_rbind)
+importFrom(vctrs,vec_recycle)
 importFrom(vctrs,vec_recycle_common)
 importFrom(vctrs,vec_rep)
+importFrom(vctrs,vec_rep_each)
+importFrom(vctrs,vec_seq_along)
 importFrom(vctrs,vec_size)
+importFrom(vctrs,vec_size_common)
 importFrom(vctrs,vec_slice)
 importFrom(vctrs,vec_sort)

NEWS.md

@@ -2,6 +2,20 @@
 
 Pre-1.0.0 numbering scheme: 0.x will indicate releases, while 0.x.y will indicate PR's.
 
+# epiprocess 0.12
+
+## Breaking changes
+
+- The low-level `new_epi_archive()` function's `x` argument has been replaced
+  with a `data_table` argument, which now has extra requirements; see
+  `?new_epi_archive`. Users should still be using `as_epi_archive()` unless they
+  have a need for something lower-level.
+
+## New features
+
+- `epi_slide_{mean,sum,opt}` now work on `epi_archive`s, preparing version
+  histories for 7-day-averages of signals, etc.
+
 # epiprocess 0.11
 
 ## Breaking changes