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@cmmr

Alkek Center for Metagenomics and Microbiome Research

CMMR researchers develop molecular and informatic tools to advance clinical microbiome research.

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  1. virmap virmap Public

    Perl 25 14

  2. rbiom rbiom Public

    Interact with Biological Observation Matrix files.

    R 11

  3. EsViritu EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    Shell 21 3

  4. Marker-MAGu Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    Python 9

Repositories

Showing 10 of 11 repositories
  • jobqueue Public

    Queue and Run Asynchronous Interruptible R Tasks on Background Processes

    cmmr/jobqueue’s past year of commit activity
    R 0 0 0 0 Updated Nov 14, 2024
  • semaphore Public

    Shared Memory Atomic Operations in R

    cmmr/semaphore’s past year of commit activity
    R 1 0 0 0 Updated Nov 13, 2024
  • rbiom Public

    Interact with Biological Observation Matrix files.

    cmmr/rbiom’s past year of commit activity
    R 11 0 3 0 Updated Oct 24, 2024
  • fillpattern Public

    Patterned Fills for 'ggplot2' and 'grid' Graphics

    cmmr/fillpattern’s past year of commit activity
    R 5 0 0 0 Updated Jun 24, 2024
  • TX_wastewater_virome Public
    cmmr/TX_wastewater_virome’s past year of commit activity
    HTML 5 0 1 0 Updated Mar 7, 2024
  • EsViritu Public

    Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

    cmmr/EsViritu’s past year of commit activity
    Shell 21 MIT 3 7 0 Updated Nov 27, 2023
  • Marker-MAGu Public

    Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes

    cmmr/Marker-MAGu’s past year of commit activity
    Python 9 MIT 0 2 0 Updated Oct 17, 2023
  • virmap Public
    cmmr/virmap’s past year of commit activity
    Perl 25 AGPL-3.0 14 17 0 Updated Feb 2, 2021
  • covid Public archive

    COVID-19 Dashboard coded in Shiny R

    cmmr/covid’s past year of commit activity
    R 0 AGPL-3.0 1 0 0 Updated Jun 26, 2020
  • puma-deprecated Public archive

    Code for the unreleased/unpublished PUMA pipeline.

    cmmr/puma-deprecated’s past year of commit activity
    Perl 0 GPL-3.0 0 0 0 Updated Jan 7, 2020
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