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@clindet

ClinDet

Clinical diagnostic tools developed by research groups of National Research Center for Translational Medicine at Shanghai.

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  1. clindet clindet Public

    A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.

    Python 2 1

  2. agmin agmin Public

    A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.

    R 2 3

  3. bget bget Public

    Portable command-line tool to query bioinformatics APIs, data, databases and files.

    Go 88 19

  4. anor anor Public

    anor: an annotation and visualization system based on R and Shiny framework

    R 32 14

  5. bioctl bioctl Public

    A simple command line tool to facilitate the data analysis.

    Go 6

  6. bioextr bioextr Public

    Extract information from text or json data.

    Go 4 1

Repositories

Showing 10 of 10 repositories
  • agmin Public

    A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.

    clindet/agmin’s past year of commit activity
    R 2 3 0 0 Updated May 9, 2024
  • clindet Public

    A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.

    clindet/clindet’s past year of commit activity
    Python 2 GPL-3.0 1 1 0 Updated May 4, 2024
  • easyfuse Public Forked from TRON-Bioinformatics/EasyFuse

    Modified version for LDT: EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

    clindet/easyfuse’s past year of commit activity
    Python 0 GPL-3.0 14 0 0 Updated Apr 10, 2024
  • bioextr Public

    Extract information from text or json data.

    clindet/bioextr’s past year of commit activity
    Go 4 1 0 0 Updated Apr 4, 2023
  • bget Public

    Portable command-line tool to query bioinformatics APIs, data, databases and files.

    clindet/bget’s past year of commit activity
    Go 88 19 5 1 Updated Feb 23, 2023
  • clinaml Public archive

    Robust prediction of the major gene expression profiling (GEP)-defined subgroups and the GEP-plus risk scores in AML.

    clindet/clinaml’s past year of commit activity
    R 1 2 1 0 Updated Dec 10, 2022
  • bioctl Public

    A simple command line tool to facilitate the data analysis.

    clindet/bioctl’s past year of commit activity
    Go 6 0 0 0 Updated Oct 22, 2020
  • chromedp Public Forked from chromedp/chromedp

    A faster, simpler way to drive browsers supporting the Chrome DevTools Protocol.

    clindet/chromedp’s past year of commit activity
    Go 0 MIT 813 0 0 Updated Oct 22, 2020
  • rctl Public

    A set of command line tools based on R and JavaScript.

    clindet/rctl’s past year of commit activity
    JavaScript 18 MIT 3 0 0 Updated Apr 21, 2020
  • anor Public

    anor: an annotation and visualization system based on R and Shiny framework

    clindet/anor’s past year of commit activity
    R 32 14 4 0 Updated Apr 20, 2020

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