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add Pokay names as 'pokay_id'
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@miseminger
miseminger committed Aug 8, 2024
1 parent bfd06d3 commit 51b3f94
Showing 1 changed file with 32 additions and 16 deletions.
48 changes: 32 additions & 16 deletions assets/virus_geneCoordinates/NC_045512.2/NC_045512.2.json
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Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,8 @@
"aa_start": 1,
"aa_end": 180,
"color": "rgb(128,0,128)",
"protein_alias": "nsp1"
"protein_alias": "nsp1",
"pokay_id": "nsp1"
},
"nsp2": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -105,7 +106,8 @@
"aa_start": 181,
"aa_end": 818,
"color": "rgb(128,0,128)",
"protein_alias": "nsp2"
"protein_alias": "nsp2",
"pokay_id": "nsp2"
},
"PL_pro": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -120,7 +122,8 @@
"aa_start": 819,
"aa_end": 2763,
"color": "rgb(128,0,128)",
"protein_alias": "PL_pro"
"protein_alias": "PL_pro",
"pokay_id": "PLpro"
},
"nsp4": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -135,7 +138,8 @@
"aa_start": 2764,
"aa_end": 3263,
"color": "rgb(128,0,128)",
"protein_alias": "nsp4"
"protein_alias": "nsp4",
"pokay_id": "nsp4"
},
"3CL": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -150,7 +154,8 @@
"aa_start": 3264,
"aa_end": 3569,
"color": "rgb(128,0,128)",
"protein_alias": "3CL"
"protein_alias": "3CL",
"pokay_id": "3CL"
},
"nsp6": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -165,7 +170,8 @@
"aa_start": 3570,
"aa_end": 3859,
"color": "rgb(128,0,128)",
"protein_alias": "nsp6"
"protein_alias": "nsp6",
"pokay_id": "nsp6"
},
"nsp7": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -180,7 +186,8 @@
"aa_start": 3860,
"aa_end": 3942,
"color": "rgb(128,0,128)",
"protein_alias": "nsp7"
"protein_alias": "nsp7",
"pokay_id": "nsp7"
},
"nsp8": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -195,7 +202,8 @@
"aa_start": 3943,
"aa_end": 4140,
"color": "rgb(128,0,128)",
"protein_alias": "nsp8"
"protein_alias": "nsp8",
"pokay_id": "nsp8"
},
"nsp9": {
"type": "mature_protein_region_of_CDS",
Expand All @@ -210,7 +218,8 @@
"aa_start": 4141,
"aa_end": 4253,
"color": "rgb(128,0,128)",
"protein_alias": "nsp9"
"protein_alias": "nsp9",
"pokay_id": "nsp9"
},
"nsp10": {
"type": "mature_protein_region_of_CDS",
Expand Down Expand Up @@ -240,7 +249,8 @@
"aa_start": 4393,
"aa_end": 5324,
"color": "rgb(128,0,128)",
"protein_alias": "RdRp"
"protein_alias": "RdRp",
"pokay_id": "RdRp"
},
"nsp13": {
"type": "mature_protein_region_of_CDS",
Expand Down Expand Up @@ -358,7 +368,8 @@
"aa_start": 1,
"aa_end": 1273,
"color": "rgb(142, 188, 102)",
"protein_alias": "S"
"protein_alias": "S",
"pokay_id": "S"
},
"gene-GU280_gp03": {
"type": "gene",
Expand Down Expand Up @@ -388,7 +399,8 @@
"aa_start": 1,
"aa_end": 275,
"color": "rgb(229, 150, 55)",
"protein_alias": "ORF3a"
"protein_alias": "ORF3a",
"pokay_id": "ORF3a"
},
"gene-GU280_gp04": {
"type": "gene",
Expand Down Expand Up @@ -419,7 +431,8 @@
"aa_start": 1,
"aa_end": 75,
"color": "rgb(170, 189, 82)",
"protein_alias": "E"
"protein_alias": "E",
"pokay_id": "E"
},
"gene-GU280_gp05": {
"type": "gene",
Expand Down Expand Up @@ -450,7 +463,8 @@
"aa_start": 1,
"aa_end": 222,
"color": "rgb(223, 67, 39)",
"protein_alias": "M"
"protein_alias": "M",
"pokay_id": "M"
},
"gene-GU280_gp06": {
"type": "gene",
Expand Down Expand Up @@ -480,7 +494,8 @@
"aa_start": 1,
"aa_end": 61,
"color": "rgb(196, 185, 69)",
"protein_alias": "ORF6"
"protein_alias": "ORF6",
"pokay_id": "ORF6"
},
"gene-GU280_gp07": {
"type": "gene",
Expand Down Expand Up @@ -601,7 +616,8 @@
"aa_start": 1,
"aa_end": 419,
"color": "rgb(80, 151, 186)",
"protein_alias": "N"
"protein_alias": "N",
"pokay_id": "N"
},
"gene-GU280_gp11": {
"type": "gene",
Expand Down

1 comment on commit 51b3f94

@miseminger
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Only Pokay names currently included in Pokay were added, did not extrapolate to other nsps not in Pokay right now

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