provenance tweak for CNPHI

cidgoh · Nov 15, 2020 · b095aff · b095aff
1 parent 165ff70
commit b095aff
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Showing 4 changed files with 10 additions and 5 deletions.
diff --git a/script/main.js b/script/main.js
@@ -11,7 +11,7 @@
  * main.html?template=test_template
  *
  */
-const VERSION = '0.13.6';
+const VERSION = '0.13.7';
 const TEMPLATES = {
   'CanCOGeN Covid-19': {'folder': 'canada_covid19', 'status': 'published'},
   'PHAC Dexa (ALPHA)': {'folder': 'phac_dexa', 'status': 'draft'},
@@ -946,15 +946,15 @@ const getInvalidCells = (hot, data) => {
 };
 
 /**
- * Test cellVal against DataHarmonizer: vX.Y.Z pattern and if it needs an
+ * Test cellVal against DataHarmonizer provenance: vX.Y.Z pattern and if it needs an
  * update, do so.
  * @param {Object} cellVal field value to be tested.
  * @param {Object} hot link to data
  * @param {Integer} row index of data
  * @param {Integer} column index of data
  */
 const checkProvenance = (cellVal, hot, row, col) => {
-  const version = 'DataHarmonizer: v' + VERSION;
+  const version = 'DataHarmonizer provenance: v' + VERSION;
   let splitVal = [];
   if (!cellVal) {
     splitVal = [version];

diff --git a/template/canada_covid19/data.js b/template/canada_covid19/data.js
@@ -3561,6 +3561,11 @@ var DATA = [
             {
               "field": "DataHarmonizer provenance"
             }
+          ],
+          "CNPHI": [
+            {
+              "field": "additional comments"
+            }
           ]
         }
       }

diff --git a/template/canada_covid19/data.tsv b/template/canada_covid19/data.tsv
@@ -123,7 +123,7 @@ Risk Factor: A variable associated with an increased risk of disease or infectio
 	Pathogen diagnostic testing	diagnostic pcr Ct value 2	xs:token							The Ct value result from a diagnostic SARS-CoV-2 RT-PCR test.	Provide the CT value of the sample from the second diagnostic RT-PCR test.	36		Gene Target #2 CT Value
 		Contributor acknowledgement												
 	Contributor acknowledgement	authors	xs:token			recommended				Names of individuals contributing to the processes of sample collection, sequence generation, analysis, and data submission.	Include the first and last names of all individuals that should be attributed, separated by a comma.	Tejinder Singh, Fei Hu, Joe Blogs	Authors	
-	Contributor acknowledgement	DataHarmonizer provenance	provenance										DataHarmonizer provenance	
+	Contributor acknowledgement	DataHarmonizer provenance	provenance										DataHarmonizer provenance	additional comments
 
 
 	umbrella bioproject accession	PRJNA623807												

diff --git a/template/canada_covid19/export.js b/template/canada_covid19/export.js
@@ -176,7 +176,7 @@ var exportLASER = (baseName, hot, data, xlsx, fileType) => {
     ['Gene Target #1 CT Value',[]],
     ['Gene Target #2',[]],
     ['Gene Target #2 CT Value',[]],
-    //['DataHarmonizer provenance',[]]
+    ['additional comments',[]]
   ]);
 
   const sourceFields = getFields(data);