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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,62 @@ | ||
| // A dictionary of possible export formats | ||
| export default {}; | ||
| export default { | ||
| NCBI_SRA: { | ||
| fileType: 'xls', | ||
| status: 'published', | ||
| method: function(dh) { | ||
| const exportHeaders = new Map([ | ||
| ["sample_name", []], | ||
| ["library_ID", []], | ||
| ["title", []], | ||
| ["library_strategy", []], | ||
| ["library_source", []], | ||
| ["library_selection", []], | ||
| ["library_layout", []], | ||
| ["platform (click for details)", []], | ||
| ["instrument_model", []], | ||
| ["design_description", []], | ||
| ["filetype", []], | ||
| ["filename", []], | ||
| ["filename2", []], | ||
| ["filename3", []], | ||
| ["filename4", []], | ||
| ["assembly", []], | ||
| ["fasta_file", []], | ||
| ["enrichment_kit", []], | ||
| ["amplicon_PCR_primer_scheme", []], | ||
| ["library_preparation_kit", []], | ||
| ["amplicon_size", []], | ||
| ["quality_control_method", []], | ||
| ["quality_control_method_version", []], | ||
| ["quality_control_determination", []], | ||
| ["quality_control_issues", []], | ||
| ["quality_control_details", []], | ||
| ["dehosting_method", []], | ||
| ["sequence_submitter_contact_email", []], | ||
| ["raw_sequence_data_processing_method", []], | ||
| ]); | ||
| const outputMatrix = [[...exportHeaders.keys()]]; | ||
| const sourceFields = dh.getFields(dh.table); | ||
| const sourceFieldNameMap = dh.getFieldNameMap(sourceFields); | ||
| dh.getHeaderMap(exportHeaders, sourceFields, 'NCBI_SRA'); | ||
| for (const inputRow of dh.getTrimmedData(dh.hot)) { | ||
| const outputRow = []; | ||
| let value; | ||
| for (const [headerName, sources] of exportHeaders) { | ||
| value = dh.getMappedField( | ||
| headerName, | ||
| inputRow, | ||
| sources, | ||
| sourceFields, | ||
| sourceFieldNameMap, | ||
| ':', | ||
| 'NCBI_SRA' | ||
| ); | ||
| outputRow.push(value); | ||
| } | ||
| outputMatrix.push(outputRow); | ||
| } | ||
| return outputMatrix; | ||
| }, | ||
| }, | ||
| }; |
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