bayezymes

These are scripts related to Bayesian hierarchical models used in a network context for mining soil metagenomes

|frac_model.R|

This script outlines the model that will be used with aggregate fraction (frac) as a random effect.

|frac_model_imp.R|

This script is the actual implementation of the model in a pairwise framework where each variable is run in a pairwise manner. The model necessitates installing JAGS-Just Another Gibbs Sampler

|community_simulation.R|

This script simulates communities using edge betweenness and the posterior distributions of beta1 from each model between pairs of variables.