chore(deps): update submissions

chanzuckerberg · Oct 7, 2024 · 4b3248a · 4b3248a
1 parent 6876867
commit 4b3248a
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Showing 4 changed files with 11 additions and 11 deletions.
diff --git a/Dockerfile.dataset_submissions b/Dockerfile.dataset_submissions
@@ -1,4 +1,4 @@
-FROM public.ecr.aws/lambda/python:3.9
+FROM public.ecr.aws/lambda/python:3.12
 
 # Update AWS root Certificates
 ADD https://truststore.pki.rds.amazonaws.com/global/global-bundle.pem /etc/ssl/certs/rds-global-bundle.pem

diff --git a/Dockerfile.upload_failures b/Dockerfile.upload_failures
@@ -1,4 +1,4 @@
-FROM public.ecr.aws/lambda/python:3.8
+FROM public.ecr.aws/lambda/python:3.12
 
 # Update AWS root Certificates
 ADD https://truststore.pki.rds.amazonaws.com/global/global-bundle.pem /etc/ssl/certs/rds-global-bundle.pem

diff --git a/Dockerfile.upload_success b/Dockerfile.upload_success
@@ -1,4 +1,4 @@
-FROM public.ecr.aws/lambda/python:3.8
+FROM public.ecr.aws/lambda/python:3.12
 
 # Update AWS root Certificates
 ADD https://truststore.pki.rds.amazonaws.com/global/global-bundle.pem /etc/ssl/certs/rds-global-bundle.pem

diff --git a/python_dependencies/processing/requirements.txt b/python_dependencies/processing/requirements.txt
@@ -1,24 +1,24 @@
-anndata==0.10.8
+anndata==0.10.9
 awscli
 boto3>=1.11.17
 botocore>=1.14.17
 cellxgene-schema
 dataclasses-json
-ddtrace==2.1.4
-numba==0.59.1
-numpy<2
+ddtrace==2.14.2
+numba==0.60.0
+numpy<3
 pandas>2,<3
 psutil>=5.9.0
 psycopg2-binary==2.*
 pyarrow>=1.0
 pydantic>=1.9.0
 python-json-logger
-pyvips==2.2.2
+pyvips==2.2.3
 requests>=2.22.0
 rpy2==3.5.16
 rsa>=4.7 # not directly required, pinned by Snyk to avoid a vulnerability
-s3fs==0.4.2
-scanpy==1.9.8
+s3fs==2024.9.0
+scanpy==1.10.3
 SQLAlchemy==2.*
 tenacity
-tiledb==0.25.0  # Portal's tiledb version should always be the same or older than Explorer's
+tiledb==0.32.3  # Portal's tiledb version should always be the same or older than Explorer's