Get tests to pass

[valenzuelaomar]

Description

Pull in tests from czid-platformics and gets most working

Before this PR, we had 16 tests pass / 13 fail. After this PR gets merged in, we will have 60 pass / 21 fail.

The 21 test failures have been created as issues

Remaining failures

FAILED tests/test_authorization.py::test_system_fields_only_mutable_by_system - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_authorization.py::test_system_types_only_mutable_by_system - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_authorization.py::test_create_wont_associate_inaccessible_relationships - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_cascade_deletion.py::test_cascade_delete - assert 1 == 0
FAILED tests/test_error_handling.py::test_python_error - assert 'Unexpected error' in "Cannot query field 'uncaughtException' on type 'Query'."
FAILED tests/test_field_visibility.py::test_hidden_mutations - AssertionError: assert 'createImmutableType' in ['createFile', 'uploadFile', 'uploadTemporaryFile', 'markUploadComplete', 'concatenateFiles', 'createSample', ...]
FAILED tests/test_field_visibility.py::test_update_fields - AssertionError: assert {'collectionI...ngRunId', ...} == {'clearlabsEx... 'technology'}
FAILED tests/test_field_visibility.py::test_creation_fields - AssertionError: assert {'collectionI...oducingRunId'} == {'collectionI...oducingRunId'}
FAILED tests/test_file_concatenation.py::test_concatenation[test1.fasta-test2.fasta] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_concatenation.py::test_concatenation[test1.fasta.gz-test2.fasta.gz] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_upload_file[member_projects2-123-r1_file] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_create_file - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_delete_from_s3[nextgen/test1.fastq-False-True] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_delete_from_s3[bla/test1.fastq-False-False] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_delete_from_s3[nextgen/test1.fastq-True-False] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_mutations.py::test_delete_from_s3[bla/test1.fastq-True-False] - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_queries.py::test_file_query - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_uploads.py::test_upload_process - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_file_uploads.py::test_upload_process_multiple_files_per_entity - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_nested_queries.py::test_relay_node_queries - TypeError: 'NoneType' object is not subscriptable
FAILED tests/test_where_clause.py::test_soft_deleted_objects - TypeError: 'NoneType' object is not subscriptable

[valenzuelaomar]

graphql_ide is set to graphiql by default