Expose deprecatedById in workflowRuns query interface

platformics/client/entities_schema.py

@@ -2911,7 +2911,7 @@ class SequencingRead(sgqlc.types.Type, EntityInterface, Node):
 
 class Taxon(sgqlc.types.Type, EntityInterface, Node):
     __schema__ = entities_schema
-    __field_names__ = ('id', 'wikipedia_id', 'description', 'common_name', 'name', 'is_phage', 'upstream_database', 'upstream_database_identifier', 'level', 'consensus_genomes', 'consensus_genomes_aggregate', 'sequencing_reads', 'sequencing_reads_aggregate', 'producing_run_id', 'owner_user_id', 'collection_id', 'created_at', 'updated_at', 'deleted_at')
+    __field_names__ = ('id', 'wikipedia_id', 'description', 'common_name', 'name', 'is_phage', 'upstream_database', 'upstream_database_identifier', 'level', 'tax_parent_id', 'tax_species_id', 'tax_genus_id', 'tax_family_id', 'tax_order_id', 'tax_class_id', 'tax_phylum_id', 'tax_kingdom_id', 'tax_superkingdom_id', 'consensus_genomes', 'consensus_genomes_aggregate', 'sequencing_reads', 'sequencing_reads_aggregate', 'producing_run_id', 'owner_user_id', 'collection_id', 'created_at', 'updated_at', 'deleted_at')
     id = sgqlc.types.Field(sgqlc.types.non_null(ID), graphql_name='id')
     wikipedia_id = sgqlc.types.Field(String, graphql_name='wikipediaId')
     description = sgqlc.types.Field(String, graphql_name='description')
@@ -2925,6 +2925,15 @@ class Taxon(sgqlc.types.Type, EntityInterface, Node):
     )
     upstream_database_identifier = sgqlc.types.Field(sgqlc.types.non_null(String), graphql_name='upstreamDatabaseIdentifier')
     level = sgqlc.types.Field(sgqlc.types.non_null(TaxonLevel), graphql_name='level')
+    tax_parent_id = sgqlc.types.Field(ID, graphql_name='taxParentId')
+    tax_species_id = sgqlc.types.Field(ID, graphql_name='taxSpeciesId')
+    tax_genus_id = sgqlc.types.Field(ID, graphql_name='taxGenusId')
+    tax_family_id = sgqlc.types.Field(ID, graphql_name='taxFamilyId')
+    tax_order_id = sgqlc.types.Field(ID, graphql_name='taxOrderId')
+    tax_class_id = sgqlc.types.Field(ID, graphql_name='taxClassId')
+    tax_phylum_id = sgqlc.types.Field(ID, graphql_name='taxPhylumId')
+    tax_kingdom_id = sgqlc.types.Field(ID, graphql_name='taxKingdomId')
+    tax_superkingdom_id = sgqlc.types.Field(ID, graphql_name='taxSuperkingdomId')
     consensus_genomes = sgqlc.types.Field(sgqlc.types.non_null(ConsensusGenomeConnection), graphql_name='consensusGenomes', args=sgqlc.types.ArgDict((
         ('where', sgqlc.types.Arg(ConsensusGenomeWhereClause, graphql_name='where', default=None)),
         ('order_by', sgqlc.types.Arg(sgqlc.types.list_of(sgqlc.types.non_null(ConsensusGenomeOrderByClause)), graphql_name='orderBy', default=())),

platformics/codegen/templates/api/types/class_name.py.j2

@@ -256,6 +256,8 @@ class {{ cls.name }}(EntityInterface):
         {%- elif attr.type == "File" %}
     {{ attr.name }}_id: Optional[strawberry.ID]
     {{ attr.name }}: Optional[Annotated["File", strawberry.lazy("api.files")]] = load_files_from("{{ attr.name }}")  # type: ignore
+        {%- elif attr.type == cls.name %}
+    {{ attr.name }}_id: Optional[strawberry.ID]
         {%- elif attr.inverse %}
     {{ attr.name }}: {{ "Sequence" if attr.multivalued else "Optional" }}[Annotated["{{ attr.type }}", strawberry.lazy("api.types.{{ attr.related_class.snake_name }}")]] = load_{{ attr.related_class.snake_name }}_rows  # type:ignore
             {%- if attr.multivalued %}
@@ -580,8 +582,10 @@ async def update_{{ cls.snake_name }}(
         {{field.name}} = await get_db_rows(db.{{ field.related_class.name }}, session, cerbos_client, principal, {"id": {"_eq": validated.{{field.name}}_id } }, [], CerbosAction.VIEW)
         if not {{field.name}}:
             raise PlatformicsException("Unauthorized: {{field.name}} does not exist")
+            {%- if field.type != cls.name %}
         params["{{field.name}}"] = {{field.name}}[0]
         del params["{{field.name}}_id"]
+            {%- endif %}
         {%- endif %}
     {%- endfor %}
 

workflows/api/schema.json

@@ -981,6 +981,15 @@
                 "ofType": null
               }
             },
+            {
+              "args": [],
+              "name": "deprecatedById",
+              "type": {
+                "kind": "SCALAR",
+                "name": "ID",
+                "ofType": null
+              }
+            },
             {
               "args": [],
               "name": "ownerUserId",