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Iniital support for file metadata. (#38)
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Original file line number | Diff line number | Diff line change |
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# yaml-language-server: $schema=https://api.cerbos.dev/latest/cerbos/policy/v1/Policy.schema.json | ||
apiVersion: api.cerbos.dev/v1 | ||
resourcePolicy: | ||
version: "default" | ||
importDerivedRoles: | ||
- common_roles | ||
resource: "file" | ||
rules: | ||
- actions: ['*'] | ||
effect: EFFECT_ALLOW | ||
derivedRoles: | ||
- project_member | ||
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- actions: ['download'] | ||
effect: EFFECT_ALLOW | ||
derivedRoles: | ||
- owner | ||
schemas: | ||
principalSchema: | ||
ref: cerbos:///principal.json |
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Original file line number | Diff line number | Diff line change |
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import uuid | ||
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import uuid6 | ||
from database.models.base import Base, Entity | ||
from sqlalchemy import Column, ForeignKey, Integer, String | ||
from sqlalchemy.dialects.postgresql import UUID | ||
from sqlalchemy.orm import mapped_column, Mapped, relationship | ||
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class File(Base): | ||
__tablename__ = "file" | ||
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id: Column[uuid.UUID] = Column(UUID(as_uuid=True), primary_key=True, default=uuid6.uuid7) | ||
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# TODO - the relationship between Entities and Files is currently being | ||
# configured in both directions: entities have {fieldname}_file_id fields, | ||
# *and* files have {entity_id, field_name} fields to map back to | ||
# entities. We'll probably deprecate one side of this relationship in | ||
# the future, but I'm not sure yet which one is going to prove to be | ||
# more useful. | ||
entity_id = mapped_column(ForeignKey("entity.id")) | ||
entity_field_name = Column(String) | ||
entity: Mapped[Entity] = relationship(Entity, back_populates="files", foreign_keys=entity_id) | ||
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status = mapped_column(String, nullable=False) | ||
protocol = mapped_column(String, nullable=False) | ||
namespace = Column(String, nullable=False) | ||
path = Column(String, nullable=False) | ||
file_format = Column(String, nullable=False) | ||
compression_type = Column(String, nullable=False) | ||
size = Column(Integer, nullable=False) |
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44 changes: 44 additions & 0 deletions
44
entities/database_migrations/versions/20230828_131743_create_files_table.py
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"""create files table | ||
Create Date: 2023-08-28 20:17:44.359982 | ||
""" | ||
import sqlalchemy as sa | ||
from alembic import op | ||
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# revision identifiers, used by Alembic. | ||
revision = "20230828_131743" | ||
down_revision = "20230809_181634" | ||
branch_labels = None | ||
depends_on = None | ||
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def upgrade(): | ||
# ### commands auto generated by Alembic - please adjust! ### | ||
op.create_table( | ||
"file", | ||
sa.Column("id", sa.UUID(), nullable=False), | ||
sa.Column("entity_id", sa.UUID(), nullable=True), | ||
sa.Column("entity_field_name", sa.String(), nullable=True), | ||
sa.Column("protocol", sa.String(), nullable=False), | ||
sa.Column("namespace", sa.String(), nullable=False), | ||
sa.Column("path", sa.String(), nullable=False), | ||
sa.Column("file_format", sa.String(), nullable=False), | ||
sa.Column("compression_type", sa.String(), nullable=False), | ||
sa.Column("size", sa.Integer(), nullable=False), | ||
sa.ForeignKeyConstraint(["entity_id"], ["entity.id"], name=op.f("fk_file_entity_id_entity")), | ||
sa.PrimaryKeyConstraint("id", name=op.f("pk_file")), | ||
) | ||
op.add_column("sequencing_read", sa.Column("sequence_file_id", sa.UUID(), nullable=True)) | ||
op.create_foreign_key( | ||
op.f("fk_sequencing_read_sequence_file_id_file"), "sequencing_read", "file", ["sequence_file_id"], ["id"] | ||
) | ||
# ### end Alembic commands ### | ||
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def downgrade(): | ||
# ### commands auto generated by Alembic - please adjust! ### | ||
op.drop_constraint(op.f("fk_sequencing_read_sequence_file_id_file"), "sequencing_read", type_="foreignkey") | ||
op.drop_column("sequencing_read", "sequence_file_id") | ||
op.drop_table("file") | ||
# ### end Alembic commands ### |
25 changes: 25 additions & 0 deletions
25
entities/database_migrations/versions/20230828_141240_add_file_status.py
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"""add file status | ||
Create Date: 2023-08-28 21:12:41.448938 | ||
""" | ||
import sqlalchemy as sa | ||
from alembic import op | ||
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# revision identifiers, used by Alembic. | ||
revision = "20230828_141240" | ||
down_revision = "20230828_131743" | ||
branch_labels = None | ||
depends_on = None | ||
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def upgrade(): | ||
# ### commands auto generated by Alembic - please adjust! ### | ||
op.add_column("file", sa.Column("status", sa.String(), nullable=False)) | ||
# ### end Alembic commands ### | ||
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def downgrade(): | ||
# ### commands auto generated by Alembic - please adjust! ### | ||
op.drop_column("file", "status") | ||
# ### end Alembic commands ### |
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