fix: Date fields on tomograms are net-new so they need to be nullable. (

#301) Date fields on tomograms are net-new so they need to be nullable.
chanzuckerberg · Oct 4, 2024 · cf8d2e0 · cf8d2e0
1 parent 483eee8
commit cf8d2e0
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Showing 9 changed files with 71 additions and 82 deletions.
diff --git a/apiv2/database/migrations/versions/20241002_152402_autogenerated.py b/apiv2/database/migrations/versions/20241002_152402_autogenerated.py
diff --git a/apiv2/database/models/tomogram.py b/apiv2/database/models/tomogram.py
diff --git a/apiv2/db_import/importers/tomogram.py b/apiv2/db_import/importers/tomogram.py
@@ -18,6 +18,7 @@
 
 class TomogramDBImporter(BaseDBImporter):
     deposition_map = {}
+
     def __init__(
         self,
         voxel_spacing_id: int,

diff --git a/apiv2/db_import/tests/populate_db.py b/apiv2/db_import/tests/populate_db.py
@@ -544,7 +544,11 @@ def populate_annotation_authors(session: sa.orm.Session) -> None:
 @write_data
 def populate_stale_annotation_method_links(session: sa.orm.Session) -> None:
     populate_stale_annotations(session)
-    session.add(AnnotationMethodLink(annotation_id=STALE_ANNOTATION_ID, name="Stale Link 0", link_type="other", link="https://some-link.com"))
+    session.add(
+        AnnotationMethodLink(
+            annotation_id=STALE_ANNOTATION_ID, name="Stale Link 0", link_type="other", link="https://some-link.com",
+        ),
+    )
     session.add(
         AnnotationMethodLink(
             annotation_id=STALE_ANNOTATION_ID,
@@ -554,6 +558,7 @@ def populate_stale_annotation_method_links(session: sa.orm.Session) -> None:
         ),
     )
 
+
 @write_data
 def populate_annotation_method_links(session: sa.orm.Session) -> None:
     populate_annotations(session)

diff --git a/apiv2/graphql_api/schema.graphql b/apiv2/graphql_api/schema.graphql
diff --git a/apiv2/graphql_api/schema.json b/apiv2/graphql_api/schema.json
diff --git a/apiv2/graphql_api/types/tomogram.py b/apiv2/graphql_api/types/tomogram.py
diff --git a/apiv2/schema/schema.yaml b/apiv2/schema/schema.yaml
@@ -2231,6 +2231,13 @@ classes:
     mixins:
     - IDMixin
     - DateStampedEntityMixin
+    slot_usage:
+      deposition_date:
+        required: False
+      last_modified_date:
+        required: False
+      release_date:
+        required: False
     attributes:
       alignment:
         name: alignment

diff --git a/apiv2/validators/tomogram.py b/apiv2/validators/tomogram.py