fix: Fixing the values for key photo literals (#286)

Fixing the values for key photo literals
chanzuckerberg · Sep 26, 2024 · 43df8f3 · 43df8f3
1 parent f8d2f2f
commit 43df8f3
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Showing 18 changed files with 0 additions and 90 deletions.
diff --git a/ingestion_tools/dataset_configs/10000.yaml b/ingestion_tools/dataset_configs/10000.yaml
@@ -453,11 +453,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: frames/CountRef.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10001.yaml b/ingestion_tools/dataset_configs/10001.yaml
@@ -423,11 +423,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: VPP/frames/CountRef_{run_name}.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10002.yaml b/ingestion_tools/dataset_configs/10002.yaml
@@ -161,11 +161,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: CountRef_{mapped_frame_name}-range.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10003.yaml b/ingestion_tools/dataset_configs/10003.yaml
@@ -117,11 +117,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: frames/{run_name}/*.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 runs:
 - sources:
   - source_glob:

diff --git a/ingestion_tools/dataset_configs/10004.yaml b/ingestion_tools/dataset_configs/10004.yaml
@@ -158,11 +158,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: gain/gain.mrc
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10005.yaml b/ingestion_tools/dataset_configs/10005.yaml
@@ -127,11 +127,6 @@ depositions:
   - literal:
       value:
       - 10005
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 runs:
 - sources:
   - source_glob:

diff --git a/ingestion_tools/dataset_configs/10006.yaml b/ingestion_tools/dataset_configs/10006.yaml
@@ -159,11 +159,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: gainRef/CountRef_mapped-{run_name}_acquisition-order_-0.0.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 runs:
 - sources:
   - source_glob:

diff --git a/ingestion_tools/dataset_configs/10007.yaml b/ingestion_tools/dataset_configs/10007.yaml
@@ -120,11 +120,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: '{run_name}/*.gain'
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10008.yaml b/ingestion_tools/dataset_configs/10008.yaml
@@ -162,11 +162,6 @@ frames:
 - sources:
   - source_glob:
       list_glob: tomo/raw_stacks/{mapped_ts_name}/frames/*{mapped_frame_name}_*.tif
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10009.yaml b/ingestion_tools/dataset_configs/10009.yaml
@@ -292,11 +292,6 @@ frames:
 - sources:
   - source_glob:
       list_glob: Tomo{run_name}/raw_data/raw_frames/*.mrc.bz2
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/dataset_configs/10010.yaml b/ingestion_tools/dataset_configs/10010.yaml
@@ -145,11 +145,6 @@ frames:
 - sources:
   - source_glob:
       list_glob: frames/{run_name}_*.tif
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 runs:
 - sources:
   - source_glob:

diff --git a/ingestion_tools/dataset_configs/10011_draft.yaml b/ingestion_tools/dataset_configs/10011_draft.yaml
@@ -92,11 +92,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: frames/CountRef.dm4
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/annotations/anno_config.yaml b/ingestion_tools/scripts/tests/fixtures/annotations/anno_config.yaml
@@ -55,11 +55,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: ''
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/dataset1.yaml b/ingestion_tools/scripts/tests/fixtures/dataset1.yaml
@@ -129,11 +129,6 @@ gains:
       list_globs:
       - VPP/frames/CountRef_{run_name}.dm4
       - VPP/frames/CountRef_{run_name}.gain
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/voxel_spacing/mrc_header.yaml b/ingestion_tools/scripts/tests/fixtures/voxel_spacing/mrc_header.yaml
@@ -43,11 +43,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: ''
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/voxel_spacing/overrides_by_run.yaml b/ingestion_tools/scripts/tests/fixtures/voxel_spacing/overrides_by_run.yaml
@@ -43,11 +43,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: ''
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/voxel_spacing/tomo_metadata.yaml b/ingestion_tools/scripts/tests/fixtures/voxel_spacing/tomo_metadata.yaml
@@ -43,11 +43,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: ''
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob:

diff --git a/ingestion_tools/scripts/tests/fixtures/voxel_spacing/tomo_run_data_map.yaml b/ingestion_tools/scripts/tests/fixtures/voxel_spacing/tomo_run_data_map.yaml
@@ -43,11 +43,6 @@ gains:
 - sources:
   - source_glob:
       list_glob: ''
-key_images:
-- sources:
-  - literal:
-      value:
-      - from_tomogram
 rawtilts:
 - sources:
   - source_multi_glob: