allow null for tiltseries quality

chanzuckerberg · Aug 23, 2024 · 0a596de · 0a596de
1 parent aaa3fa0
commit 0a596de
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diff --git a/...724357403030_alter_tiltseries_quality_nullable_and_annotation_object_id_comments/down.sql b/...724357403030_alter_tiltseries_quality_nullable_and_annotation_object_id_comments/down.sql
@@ -0,0 +1,2 @@
+comment on column "public"."annotations"."object_id" is E'Gene Ontology Cellular Component identifier for the annotation object';
+alter table "public"."tiltseries_quality" alter column "annotation_object_id" set not null;
diff --git a/.../1724357403030_alter_tiltseries_quality_nullable_and_annotation_object_id_comments/up.sql b/.../1724357403030_alter_tiltseries_quality_nullable_and_annotation_object_id_comments/up.sql
@@ -0,0 +1,2 @@
+comment on column "public"."annotations"."object_id" is E'Gene Ontology Cellular Component identifier or UniProtKB accession for the annotation object.';
+alter table "public"."tiltseries_quality" alter column "annotation_object_id" drop not null;
diff --git a/ingestion_tools/dataset_configs/gjensen/10015.yaml b/ingestion_tools/dataset_configs/gjensen/10015.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 45.0
       min: -45.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt; non-constant tilt steps
     total_flux: 45.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10018.yaml b/ingestion_tools/dataset_configs/gjensen/10018.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt
     total_flux: 50.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10019.yaml b/ingestion_tools/dataset_configs/gjensen/10019.yaml
@@ -103,7 +103,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt
     total_flux: 50.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10020.yaml b/ingestion_tools/dataset_configs/gjensen/10020.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt
     total_flux: 50.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10021.yaml b/ingestion_tools/dataset_configs/gjensen/10021.yaml
@@ -103,7 +103,7 @@ tiltseries:
     tilt_range:
       max: 66.0
       min: -66.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt
     total_flux: 120.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10022.yaml b/ingestion_tools/dataset_configs/gjensen/10022.yaml
@@ -101,7 +101,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 150.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10024.yaml b/ingestion_tools/dataset_configs/gjensen/10024.yaml
@@ -103,7 +103,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: float {ts-tilt_step}
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10025.yaml b/ingestion_tools/dataset_configs/gjensen/10025.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: 0.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 86.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10026.yaml b/ingestion_tools/dataset_configs/gjensen/10026.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 79.4

diff --git a/ingestion_tools/dataset_configs/gjensen/10027.yaml b/ingestion_tools/dataset_configs/gjensen/10027.yaml
@@ -101,7 +101,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: 54.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10028.yaml b/ingestion_tools/dataset_configs/gjensen/10028.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10029.yaml b/ingestion_tools/dataset_configs/gjensen/10029.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10030.yaml b/ingestion_tools/dataset_configs/gjensen/10030.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10031.yaml b/ingestion_tools/dataset_configs/gjensen/10031.yaml
@@ -100,7 +100,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 55.6

diff --git a/ingestion_tools/dataset_configs/gjensen/10032.yaml b/ingestion_tools/dataset_configs/gjensen/10032.yaml
@@ -101,7 +101,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10033.yaml b/ingestion_tools/dataset_configs/gjensen/10033.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10034.yaml b/ingestion_tools/dataset_configs/gjensen/10034.yaml
@@ -101,7 +101,7 @@ tiltseries:
     tilt_range:
       max: 50.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 151.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10035.yaml b/ingestion_tools/dataset_configs/gjensen/10035.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10036.yaml b/ingestion_tools/dataset_configs/gjensen/10036.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: 50.0
       min: -50.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: 179.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10037.yaml b/ingestion_tools/dataset_configs/gjensen/10037.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: 50.0
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: min to max tilt
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10039.yaml b/ingestion_tools/dataset_configs/gjensen/10039.yaml
@@ -95,7 +95,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: 110.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10046.yaml b/ingestion_tools/dataset_configs/gjensen/10046.yaml
@@ -103,7 +103,7 @@ tiltseries:
     tilt_range:
       max: 50.0
       min: -50.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: min to max tilt
     total_flux: 130.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10052.yaml b/ingestion_tools/dataset_configs/gjensen/10052.yaml
@@ -104,7 +104,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: min to max tilt
     total_flux: 120.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10053.yaml b/ingestion_tools/dataset_configs/gjensen/10053.yaml
@@ -102,7 +102,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 140.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10054.yaml b/ingestion_tools/dataset_configs/gjensen/10054.yaml
@@ -106,7 +106,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: float {ts-tilt_step}
     tilting_scheme: starting tilt to max then min
     total_flux: 130.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10055.yaml b/ingestion_tools/dataset_configs/gjensen/10055.yaml
@@ -106,7 +106,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 130.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10057.yaml b/ingestion_tools/dataset_configs/gjensen/10057.yaml
@@ -107,7 +107,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 130.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10058.yaml b/ingestion_tools/dataset_configs/gjensen/10058.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10059.yaml b/ingestion_tools/dataset_configs/gjensen/10059.yaml
@@ -101,7 +101,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10060.yaml b/ingestion_tools/dataset_configs/gjensen/10060.yaml
@@ -98,7 +98,7 @@ tiltseries:
     tilt_range:
       max: 51.0
       min: -51.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 3.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10064.yaml b/ingestion_tools/dataset_configs/gjensen/10064.yaml
@@ -111,7 +111,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10065.yaml b/ingestion_tools/dataset_configs/gjensen/10065.yaml
@@ -112,7 +112,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10066.yaml b/ingestion_tools/dataset_configs/gjensen/10066.yaml
@@ -112,7 +112,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10067.yaml b/ingestion_tools/dataset_configs/gjensen/10067.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10068.yaml b/ingestion_tools/dataset_configs/gjensen/10068.yaml
@@ -112,7 +112,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10070.yaml b/ingestion_tools/dataset_configs/gjensen/10070.yaml
@@ -112,7 +112,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: float {ts-tilt_step}
     tilting_scheme: starting tilt to max then min
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10071.yaml b/ingestion_tools/dataset_configs/gjensen/10071.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.5
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10072.yaml b/ingestion_tools/dataset_configs/gjensen/10072.yaml
@@ -110,7 +110,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: float {ts-total_flux}

diff --git a/ingestion_tools/dataset_configs/gjensen/10073.yaml b/ingestion_tools/dataset_configs/gjensen/10073.yaml
@@ -111,7 +111,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -50.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 1.0
     tilting_scheme: starting tilt to max then min
     total_flux: 90.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10076.yaml b/ingestion_tools/dataset_configs/gjensen/10076.yaml
@@ -109,7 +109,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10081.yaml b/ingestion_tools/dataset_configs/gjensen/10081.yaml
@@ -113,7 +113,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10084.yaml b/ingestion_tools/dataset_configs/gjensen/10084.yaml
@@ -113,7 +113,7 @@ tiltseries:
     tilt_range:
       max: 60.0
       min: -60.0
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: 2.0
     tilting_scheme: starting tilt to max then min
     total_flux: 100.0

diff --git a/ingestion_tools/dataset_configs/gjensen/10086.yaml b/ingestion_tools/dataset_configs/gjensen/10086.yaml
@@ -105,7 +105,7 @@ tiltseries:
     tilt_range:
       max: float {ts-tilt_range-max}
       min: float {ts-tilt_range-min}
-    tilt_series_quality: 4
+    tilt_series_quality: null
     tilt_step: float {ts-tilt_step}
     tilting_scheme: starting tilt to max then min
     total_flux: float {ts-total_flux}