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Merge remote-tracking branch 'origin/test-release' into test-release #8

Merge remote-tracking branch 'origin/test-release' into test-release

Merge remote-tracking branch 'origin/test-release' into test-release #8

name: Updates to Ontology Files
on:
push:
paths:
- "**/api/python/src/cellxgene_ontology_guide/artifacts/ontology_info.yml"
branches-ignore:
- main
jobs:
ontology-processing:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
with:
ref: ${{ github.event.pull_request.head.ref }}
- name: Set up Python 3.8
uses: actions/setup-python@v1
with:
python-version: 3.8
- name: Python cache
uses: actions/cache@v1
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: install requirements
run: |
pip install -r tools/ontology-builder/requirements.txt
- name: setup git
run: |
git config user.name github-actions
git config user.email [email protected]
- name: ontology-processing
run: |
python3 ./tools/ontology-builder/src/all_ontology_generator.py
git add ./api/python/src/cellxgene_ontology_guide/artifacts/all_ontology.json.gz
- name: Commit
run: |
git commit -m "AUTO: update ontologies"
git push