Generate Ontology Descendant Mappings #43

	#This is a github actions that run every monday at 12am. It will run generate_decendant_mapping.py off the main
	# github branch and open a pull request to commit the new ontology_decendant files to cellxgene-ontology-guide

	name: Generate Ontology Descendant Mappings
	on:
	schedule:
	- cron: "0 0 * * 1"

	push:
	paths:
	- "/ontology-assets/.json"
	- "/ontology-assets/.gz"
	branches:
	- main
	workflow_dispatch:

	permissions:
	id-token: write
	contents: write
	pull-requests: write

	jobs:
	generate-ontology-descendant-mappings:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout main
	uses: actions/checkout@v4
	with:
	ref: main
	fetch-depth: 1
	- name: Set up Python 3.11
	uses: actions/setup-python@v5
	with:
	python-version: 3.11
	- name: Python cache
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('*/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-
	- name: setup git
	run: \|
	git config user.name github-actions
	git config user.email [email protected]
	- name: install requirements
	run: \|
	cd ./tools/ontology-builder/
	pip install -r requirements.txt
	- name: generate ontology descendant mappings
	run: \|
	python3 tools/ontology-builder/src/descendent_mapping_generator.py
	- name: Create Pull Request
	uses: peter-evans/create-pull-request@v6
	with:
	token: ${{ secrets.GITHUB_TOKEN }}
	add-paths: \|
	./ontology-assets/*.json
	commit-message: "chore: update ontology descendant mappings"
	title: "chore: update ontology descendant mappings"
	branch: update-ontology-descendant-mappings
	base: main
	signoff: true
	draft: false

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