v1.11.0

Changes

R and Python package dependencies updated to use TileDB-SOMA version 1.8.0

What's Changed

• [misc] Fix CL_0002494 in geneformer pipeline by @pablo-gar in #1000
• [docs] Add embeddings API to docs by @martinkim0 in #1005
• [docs] Fix docstrings for various functions by @martinkim0 in #1002
• [builder] fix incorrect filtering of tissue type by @bkmartinjr in #1010
• [misc] add support for var embeddings to contrib curation tool by @bkmartinjr in #995
• [builder] add explicit validation check for primary tissue cells by @bkmartinjr in #1015
• [builder] update uberon and tissue_general mapping to schema 4 standard by @bkmartinjr in #1018
• [docs] Update copyright notice by @ebezzi in #978
• [docs] misc docsite adjustments by @ebezzi in #1020
• [profiler] Early version of profiler harness by @beroy in #959
• [docs] Geneformer docs errata by @mlin in #1003
• [python] [r] Upgrade to tiledbsoma 1.8.0 by @ebezzi in #1046

New Contributors

• @beroy made their first contribution in #959

Full Changelog: v1.10.2...v1.11.0