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I found out how you have to do to do modification to the same branch.
git clone https://github.com/cfm-mpc/pyscf.git cd pyscf/ git branch -a
You should see remotes/origin/nao at the end of the list. Then,
git fetch origin git checkout -b nao origin/nao
Then you will be in the new branch with nao. You can now do changes.
To commit:
git commit -m "test commit" pyscf/nao/m_tddft_iter.py
and then To push:
git push --set-upstream origin nao
TODO