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Build with tcr-dist binaries in v0.1.0-alpha
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jwkai committed Apr 22, 2022
1 parent 47f4ac7 commit 453dca4
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13 changes: 13 additions & 0 deletions bbtools.dockerfile
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Expand Up @@ -79,13 +79,26 @@ COPY hla_class_setup/Gemfile ./
RUN gem install bundler:1.17.2
RUN bundle install


# Install Python dependencies:
COPY alldata/bblab_site/requirements.txt .
COPY alldata/bblab_site/requirements27.txt .
RUN pip3 install --no-cache-dir -r requirements.txt
RUN pip2 install --no-cache-dir -r requirements27.txt


# Run setup for tcr-dist
RUN wget https://github.com/cfe-lab/bblab-server/releases/download/v0.1.0-alpha/blast-2.2.16-x64-linux.tar.gz && \
wget https://github.com/cfe-lab/bblab-server/releases/download/v0.1.0-alpha/tcrdist_extras_v2.tgz && \
tar -xzf blast-2.2.16-x64-linux.tar.gz && \
tar -xzf tcrdist_extras_v2.tgz && \
mv ./tcrdist_extras_v2/external/ /alldata/bblab_site/depend/apps/tcr-dist/ && \
mv ./blast-2.2.16/ /alldata/bblab_site/depend/apps/tcr-dist/external/ && \
mv ./tcrdist_extras_v2/datasets/ /alldata/bblab_site/depend/apps/tcr-dist/ && \
mv ./tcrdist_extras_v2/db/ /alldata/bblab_site/depend/apps/tcr-dist/ && \
mv ./tcrdist_extras_v2/testing_ref/ /alldata/bblab_site/depend/apps/tcr-dist/


# load configuration for Apache server
COPY conf/apache2.conf /etc/apache2/
COPY conf/tools-*.conf /etc/apache2/mods-available/
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