Test Collect Metadata Script

Refactored metadata collection and fixes an issue with newly loaded datasets #12

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Triggered via pull request January 21, 2025 16:20

Claptar

synchronize #7

refactor_metadata_pulling

Status Success

Total duration 1m 19s

Artifacts –

test.yml

on: pull_request

Matrix: test

Annotations

9 warnings

Test GSE117988: Crap .fastq files, but .sra files are available in ENA metadata

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE160513: Regular GEO dataset

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE111360: Subset list provided

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE274955: Broken .sra files. Files in .bam format available

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE264508: .fastq and .sra files in ENA metadata

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test E-MTAB-9221: Regular ENA dataset

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test PRJNA511433: Regular GEO dataset but using BioProject

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE191067: No ENA metadata

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

Test GSE250130: No Project or SubProjects in soft_family file

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636