refactor(extract): trim read names and read ids #54
test.yml
on: push
Formatting
12s
Linting
1m 56s
MSRV
12s
Matrix: Testing
Annotations
6 errors and 108 warnings
MSRV
failed to select a version for `env_logger`.
|
MSRV
The process '/home/runner/.cargo/bin/cargo' failed with exit code 101
|
Testing (windows)
test failed, to rerun pass `--test test_fa2fq`
|
Testing (windows)
test failed, to rerun pass `--test test_fq2fa`
|
Testing (windows)
2 targets failed:
|
Testing (windows)
The process 'C:\Users\runneradmin\.cargo\bin\cargo.exe' failed with exit code 101
|
Formatting
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Formatting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Formatting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
MSRV
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
MSRV
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
MSRV
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
MSRV
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
MSRV
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
MSRV
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
function `graph_edit_distance` is never used:
src/graph/ged.rs#L72
warning: function `graph_edit_distance` is never used
--> src/graph/ged.rs:72:4
|
72 | fn graph_edit_distance(graph1: &DiGraph<(), ()>, graph2: &DiGraph<(), ()>) -> usize {
| ^^^^^^^^^^^^^^^^^^^
|
function `calculate_edit_distance` is never used:
src/graph/ged.rs#L47
warning: function `calculate_edit_distance` is never used
--> src/graph/ged.rs:47:4
|
47 | fn calculate_edit_distance(
| ^^^^^^^^^^^^^^^^^^^^^^^
|
function `ged_recursive` is never used:
src/graph/ged.rs#L16
warning: function `ged_recursive` is never used
--> src/graph/ged.rs:16:4
|
16 | fn ged_recursive(
| ^^^^^^^^^^^^^
|
constant `COST_ADD_DEL` is never used:
src/graph/ged.rs#L14
warning: constant `COST_ADD_DEL` is never used
--> src/graph/ged.rs:14:7
|
14 | const COST_ADD_DEL: usize = 1;
| ^^^^^^^^^^^^
|
constant `COST_SUB` is never used:
src/graph/ged.rs#L13
warning: constant `COST_SUB` is never used
--> src/graph/ged.rs:13:7
|
13 | const COST_SUB: usize = 1;
| ^^^^^^^^
|
constant `COST_DEL` is never used:
src/graph/ged.rs#L12
warning: constant `COST_DEL` is never used
--> src/graph/ged.rs:12:7
|
12 | const COST_DEL: usize = 1;
| ^^^^^^^^
|
constant `COST_ADD` is never used:
src/graph/ged.rs#L11
warning: constant `COST_ADD` is never used
--> src/graph/ged.rs:11:7
|
11 | const COST_ADD: usize = 1;
| ^^^^^^^^
|
= note: `#[warn(dead_code)]` on by default
|
unreachable pattern:
src/main.rs#L178
warning: unreachable pattern
--> src/main.rs:178:9
|
178 | _ => info!("Subcommand not implemented yet!"),
| ^
|
= note: `#[warn(unreachable_patterns)]` on by default
|
unused variable: `graph1`:
src/graph/ged.rs#L48
warning: unused variable: `graph1`
--> src/graph/ged.rs:48:5
|
48 | graph1: &DiGraph<(), ()>,
| ^^^^^^ help: if this is intentional, prefix it with an underscore: `_graph1`
|
unused variable: `mapped_nodes1`:
src/graph/ged.rs#L54
warning: unused variable: `mapped_nodes1`
--> src/graph/ged.rs:54:9
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54 | let mapped_nodes1: HashSet<_> = mapping.iter().filter_map(|(a, _)| *a).collect();
| ^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_mapped_nodes1`
|
= note: `#[warn(unused_variables)]` on by default
|
Linting
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/clippy-check@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Linting
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/clippy-check@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Linting
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Testing (stable)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (stable):
src/graph/ged.rs#L54
unused variable: `mapped_nodes1`
|
Testing (stable):
src/graph/ged.rs#L48
unused variable: `graph1`
|
Testing (stable):
src/main.rs#L178
unreachable pattern
|
Testing (stable):
src/graph/ged.rs#L11
constant `COST_ADD` is never used
|
Testing (stable):
src/graph/ged.rs#L12
constant `COST_DEL` is never used
|
Testing (stable):
src/graph/ged.rs#L13
constant `COST_SUB` is never used
|
Testing (stable):
src/graph/ged.rs#L14
constant `COST_ADD_DEL` is never used
|
Testing (stable):
src/graph/ged.rs#L16
function `ged_recursive` is never used
|
Testing (stable):
src/graph/ged.rs#L47
function `calculate_edit_distance` is never used
|
Testing (stable):
src/graph/ged.rs#L72
function `graph_edit_distance` is never used
|
Testing (beta)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Testing (beta)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Testing (beta):
src/graph/ged.rs#L54
unused variable: `mapped_nodes1`
|
Testing (beta):
src/graph/ged.rs#L48
unused variable: `graph1`
|
Testing (beta):
src/main.rs#L178
unreachable pattern
|
Testing (beta):
src/graph/ged.rs#L11
constant `COST_ADD` is never used
|
Testing (beta):
src/graph/ged.rs#L12
constant `COST_DEL` is never used
|
Testing (beta):
src/graph/ged.rs#L13
constant `COST_SUB` is never used
|
Testing (beta):
src/graph/ged.rs#L14
constant `COST_ADD_DEL` is never used
|
Testing (beta):
src/graph/ged.rs#L16
function `ged_recursive` is never used
|
Testing (beta):
src/graph/ged.rs#L47
function `calculate_edit_distance` is never used
|
Testing (beta):
src/graph/ged.rs#L72
function `graph_edit_distance` is never used
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (beta)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Testing (windows)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows):
src/graph/ged.rs#L54
unused variable: `mapped_nodes1`
|
Testing (windows):
src/graph/ged.rs#L48
unused variable: `graph1`
|
Testing (windows):
src/main.rs#L178
unreachable pattern
|
Testing (windows):
src/graph/ged.rs#L11
constant `COST_ADD` is never used
|
Testing (windows):
src/graph/ged.rs#L12
constant `COST_DEL` is never used
|
Testing (windows):
src/graph/ged.rs#L13
constant `COST_SUB` is never used
|
Testing (windows):
src/graph/ged.rs#L14
constant `COST_ADD_DEL` is never used
|
Testing (windows):
src/graph/ged.rs#L16
function `ged_recursive` is never used
|
Testing (windows):
src/graph/ged.rs#L47
function `calculate_edit_distance` is never used
|
Testing (windows):
src/graph/ged.rs#L72
function `graph_edit_distance` is never used
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (windows)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
|
Testing (macos)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions-rs/toolchain@v1, actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
|
Testing (macos):
src/graph/ged.rs#L54
unused variable: `mapped_nodes1`
|
Testing (macos):
src/graph/ged.rs#L48
unused variable: `graph1`
|
Testing (macos):
src/main.rs#L178
unreachable pattern
|
Testing (macos):
src/graph/ged.rs#L11
constant `COST_ADD` is never used
|
Testing (macos):
src/graph/ged.rs#L12
constant `COST_DEL` is never used
|
Testing (macos):
src/graph/ged.rs#L13
constant `COST_SUB` is never used
|
Testing (macos):
src/graph/ged.rs#L14
constant `COST_ADD_DEL` is never used
|
Testing (macos):
src/graph/ged.rs#L16
function `ged_recursive` is never used
|
Testing (macos):
src/graph/ged.rs#L47
function `calculate_edit_distance` is never used
|
Testing (macos):
src/graph/ged.rs#L72
function `graph_edit_distance` is never used
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
Testing (macos)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|