deepbiop-cli-v0.1.11

Added

• Add FaToFq command for fastq to fasta conversion
• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add support for writing compressed fastq files
• Add fastq to fasta conversion command
• Add new file fq2fa.rs
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Improve file variable names in FqToFa struct
• Remove unnecessary empty line
• Improve function and field comments
• Refactor file_path assignment in bam2fq.rs
• Merge branch 'dev'

deepbiop-v0.1.11

Added

• Update keywords in Cargo.toml files
• Add CLI installation guide

Other

• Merge branch 'dev'

deepbiop-utils-v0.1.11

Added

• Update keywords in Cargo.toml files
• Add CLI installation guide

Other

• Merge branch 'dev'

deepbiop-fq-v0.1.11

Added

• Update keywords in Cargo.toml files
• Add Python bindings for TensorEncoder
• Add CLI installation guide

Other

• Merge branch 'dev'

deepbiop-bam-v0.1.11

Added

• Update keywords in Cargo.toml files
• (io) Refactor bam2fq function to handle equal seq and qual lengths
• Add BAM to fastq conversion functionality
• Add CLI installation guide

Other

• Remove unnecessary empty line
• Improve function and field comments
• Improve code readability and performance
• Merge branch 'dev'

deepbiop-v0.1.9

Added

• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update badge URL for deepbiop crate

Other

• Update README.md formatting
• Update workspace dependencies in Cargo.toml
• Add tests for bam and fq modules
• Initial commit

deepbiop-v0.1.8

Added

• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update badge URL for deepbiop crate

Other

• Update README.md formatting
• Update workspace dependencies in Cargo.toml
• Add tests for bam and fq modules
• Initial commit

deepbiop-v0.1.10

Added

• Update MSRV to 1.75.0

Other

• Update MSRV version in README and improve formatting

deepbiop-utils-v0.1.9

Added

• Update function definitions and imports

Other

• Add documentation for chimeric and cigar operations
• Remove outdated documentation badge
• Add documentation badge to README.md

deepbiop-utils-v0.1.8

Added

• Add pyo3-stub-gen dependency and stub generation

Other

• Update deepbiop-fq crate to improve code organization and remove unused functions
• Update deepbiop-bam crate to include chimeric event struct and functions
• Update badges in README.md to use consistent format