Code

Agnostic#90

Code

Merged

ggrimes merged 73 commits intogh-pagescarpentries-incubator/workflows-nextflow:gh-pagesfrom agnosticcarpentries-incubator/workflows-nextflow:agnosticCopy head branch name to clipboardDec 7, 2023

+934-862

Commits

Commits on Mar 25, 2022

• updated process 1 episode to be less rnaseq specific by giving examples and exercises that use simple bash commands

  ggrimes

  committed
  144e108

  Copy full SHA for 144e108

Commits on Mar 28, 2022

• update episode 2 exercises and examples to be agnostoc

  ggrimes

  committed
  449a7a4

  Copy full SHA for 449a7a4

• update process1 episode

  ggrimes

  committed
  a9c0113

  Copy full SHA for a9c0113

Commits on Mar 29, 2022

• fixed typos in process part 2

  ggrimes

  committed
  092bd69

  Copy full SHA for 092bd69

• Changed workflow episode to be agnostic

  ggrimes

  committed
  f554e0a

  Copy full SHA for f554e0a

Commits on May 24, 2022

• Update 05-processes-part1.md

  Show description for 66de6d5
  ggrimes

  authored
  66de6d5

  Copy full SHA for 66de6d5

• Create process_01.nf

  ggrimes

  authored
  cf062bd

  Copy full SHA for cf062bd

• Update process_exercise_simple_process.nf

  ggrimes

  authored
  edcf3e4

  Copy full SHA for edcf3e4

• Update process_multi_line.nf

  ggrimes

  authored
  42d93ea

  Copy full SHA for 42d93ea

• Update process_script.nf

  ggrimes

  authored
  caa87b0

  Copy full SHA for caa87b0

• Update process_script_params.nf

  ggrimes

  authored
  4e0cd4e

  Copy full SHA for 4e0cd4e

• Update process_script_params.nf

  ggrimes

  authored
  2df2c65

  Copy full SHA for 2df2c65

• Update process_escape_bash.nf

  ggrimes

  authored
  65a87cd

  Copy full SHA for 65a87cd

• Update process_shell.nf

  ggrimes

  authored
  01af224

  Copy full SHA for 01af224

• Update process_conditional.nf

  ggrimes

  authored
  66cd168

  Copy full SHA for 66cd168

• Update process_input_value.nf

  ggrimes

  authored
  a3ed0c4

  Copy full SHA for a3ed0c4

• Update process_exercise_input.nf

  ggrimes

  authored
  a87e818

  Copy full SHA for a87e818

• Update process_exercise_input_answer.nf

  ggrimes

  authored
  fd824ce

  Copy full SHA for fd824ce

• Update process_exercise_combine_answer.nf

  ggrimes

  authored
  6a73782

  Copy full SHA for 6a73782

• Update process_exercise_repeat.nf

  ggrimes

  authored
  109da6f

  Copy full SHA for 109da6f

• Update process_exercise_repeat_answer.nf

  ggrimes

  authored
  3b0b7c1

  Copy full SHA for 3b0b7c1

• Update process_simple.nf

  ggrimes

  authored
  44760f4

  Copy full SHA for 44760f4

• Create process_exercise_script_params.nf

  ggrimes

  authored
  afa6530

  Copy full SHA for afa6530

• Update process_script_params.nf

  ggrimes

  authored
  d510917

  Copy full SHA for d510917

• Create process_exercise_script_params_answers.nf

  ggrimes

  authored
  c254bf9

  Copy full SHA for c254bf9

• Update 05-processes-part1.md

  Show description for 8680906
  ggrimes

  authored
  8680906

  Copy full SHA for 8680906

• Update 05-processes-part1.md

  Show description for 5faccba
  ggrimes

  authored
  5faccba

  Copy full SHA for 5faccba

• Update process_exercise_combine.nf

  ggrimes

  authored
  fc13099

  Copy full SHA for fc13099

• Update process_exercise_combine_answer.nf

  ggrimes

  authored
  b0c1a41

  Copy full SHA for b0c1a41

• Update process_exercise_combine.nf

  ggrimes

  authored
  de2e4cf

  Copy full SHA for de2e4cf

• Update 05-processes-part1.md

  Show description for 68bbfe6
  ggrimes

  authored
  68bbfe6

  Copy full SHA for 68bbfe6

• Update process_output_value.nf

  ggrimes

  authored
  f72f11c

  Copy full SHA for f72f11c

• Update process_output_file.nf

  ggrimes

  authored
  a7df5e8

  Copy full SHA for a7df5e8

• Update 05-processes-part2.md

  ggrimes

  authored
  28f3a61

  Copy full SHA for 28f3a61

• Update process_exercise_output.nf

  ggrimes

  authored
  1a380f3

  Copy full SHA for 1a380f3

• Update process_exercise_output_answer.nf

  ggrimes

  authored
  34d1c97

  Copy full SHA for 34d1c97

• Update 05-processes-part2.md

  ggrimes

  authored
  1205e55

  Copy full SHA for 1205e55

• Update process_tuple_io.nf

  ggrimes

  authored
  edd2456

  Copy full SHA for edd2456

• Update process_tuple_io.nf

  ggrimes

  authored
  98ced2a

  Copy full SHA for 98ced2a

• Update 05-processes-part2.md

  ggrimes

  authored
  32f15f0

  Copy full SHA for 32f15f0

• Update process_exercise_tuple.nf

  ggrimes

  authored
  a2aa1aa

  Copy full SHA for a2aa1aa

• Update process_exercise_tuple_answer.nf

  ggrimes

  authored
  31d62b1

  Copy full SHA for 31d62b1

• Update 05-processes-part2.md

  ggrimes

  authored
  1b030d9

  Copy full SHA for 1b030d9

• Update process_publishDir.nf

  ggrimes

  authored
  804d099

  Copy full SHA for 804d099

• Update process_publishDir_semantic.nf

  ggrimes

  authored
  1df36e6

  Copy full SHA for 1df36e6

• Update process_exercise_publishDir.nf

  ggrimes

  authored
  75f82d5

  Copy full SHA for 75f82d5

• Update process_exercise_publishDir_answer.nf

  ggrimes

  authored
  3d6e3ca

  Copy full SHA for 3d6e3ca

• Update process_exercise_publishDir_answer.nf

  ggrimes

  authored
  59908a6

  Copy full SHA for 59908a6

• Update 05-processes-part2.md

  ggrimes

  authored
  9d7a90a

  Copy full SHA for 9d7a90a

• Update process_output_multiple.nf

  ggrimes

  authored
  ab9dcba

  Copy full SHA for ab9dcba

• Update process_output_multiple.nf

  ggrimes

  authored
  c89bf89

  Copy full SHA for c89bf89

• Update process_exercise_tuple.nf

  ggrimes

  authored
  a725fa7

  Copy full SHA for a725fa7

• Update process_exercise_tuple_answer.nf

  ggrimes

  authored
  33f500a

  Copy full SHA for 33f500a

• Update process_exercise_tuple.nf

  ggrimes

  authored
  bf07435

  Copy full SHA for bf07435

• Update process_exercise_tuple.nf

  ggrimes

  authored
  834a844

  Copy full SHA for 834a844

• Update process_exercise_tuple_answer.nf

  ggrimes

  authored
  1ac627e

  Copy full SHA for 1ac627e

• Update 05-processes-part2.md

  ggrimes

  authored
  cf38323

  Copy full SHA for cf38323

• Update process_exercise_directives_answers.nf

  Show description for abf3859
  ggrimes

  authored
  abf3859

  Copy full SHA for abf3859

• Update 05-processes-part2.md

  ggrimes

  authored
  85dc6d2

  Copy full SHA for 85dc6d2

Commits on May 25, 2022

• Update process_exercise_publishDir.nf

  ggrimes

  authored
  802914b

  Copy full SHA for 802914b

• Update 05-processes-part2.md

  ggrimes

  authored
  a60f08f

  Copy full SHA for a60f08f

Commits on Jan 25, 2023

• Update 05-processes-part2.md

  Show description for 4cd325e
  ggrimes

  authored
  4cd325e

  Copy full SHA for 4cd325e

Commits on Sep 29, 2023

• Update 05-processes-part1.md

  Show description for 8191afe
  VeBeKay1

  authored
  8191afe

  Copy full SHA for 8191afe

• Merge pull request #34 from VeBeKay1/agnostic

  Show description for c99474a
  ggrimes

  authored
  c99474a

  Copy full SHA for c99474a

• Update 05-processes-part1.md

  Show description for 109f09a
  VeBeKay1

  authored
  109f09a

  Copy full SHA for 109f09a

• Update 05-processes-part2.md

  VeBeKay1

  authored
  71dafc6

  Copy full SHA for 71dafc6

Commits on Nov 10, 2023

• Merge pull request #35 from VeBeKay1/agnostic

  Show description for ddbcea8
  ggrimes

  authored
  ddbcea8

  Copy full SHA for ddbcea8

Commits on Nov 21, 2023

• Update configuration_fastp.nf

  Show description for 8b9d1ab
  ggrimes

  authored
  8b9d1ab

  Copy full SHA for 8b9d1ab

Commits on Dec 6, 2023

• Merge branch 'stable' into agnostic

  ggrimes

  authored
  bf22955

  Copy full SHA for bf22955

• Merge pull request #85 from ggrimes/agnostic

  Show description for a6a4ee1
  ggrimes

  authored
  a6a4ee1

  Copy full SHA for a6a4ee1

• Merge pull request #86 from carpentries-incubator/gh-pages

  Show description for 176df07
  ggrimes

  authored
  176df07

  Copy full SHA for 176df07

• Merge pull request #87 from carpentries-incubator/gh-pages

  Show description for 8f05e00
  ggrimes

  authored
  8f05e00

  Copy full SHA for 8f05e00

Commits on Dec 7, 2023

• Merge pull request #89 from carpentries-incubator/gh-pages

  Show description for 13d1326
  ggrimes

  authored
  13d1326

  Copy full SHA for 13d1326