try to add duckdb to deps command

carpentries-incubator · Dec 20, 2024 · 204190d · 204190d
1 parent 3c85efa
commit 204190d
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Showing 3 changed files with 24 additions and 4 deletions.
diff --git a/learners/setup.md b/learners/setup.md
@@ -20,7 +20,7 @@ double-clicking the icon and enter these commands:
 install.packages(c("BiocManager", "remotes"))
 
 BiocManager::install(c("AUCell", "batchelor", "BiocStyle", 
-                       "CuratedAtlasQueryR", "DropletUtils", 
+                       "CuratedAtlasQueryR", "DropletUtils", "duckdb",
                        "EnsDb.Mmusculus.v79", "MouseGastrulationData",
                        "scDblFinder", "Seurat", "lgeistlinger/SeuratData",
                        "SingleR", "TENxBrainData", "zellkonverter"),

diff --git a/osca-carpentries.Rproj b/osca-carpentries.Rproj
@@ -1,4 +1,5 @@
 Version: 1.0
+ProjectId: 80e484d9-aa9f-4ea0-80c6-c72c33627224
 
 RestoreWorkspace: No
 SaveWorkspace: No

diff --git a/renv/profiles/lesson-requirements/renv.lock b/renv/profiles/lesson-requirements/renv.lock
@@ -2,6 +2,26 @@
   "R": {
     "Version": "4.4.2",
     "Repositories": [
+      {
+        "Name": "BioCsoft",
+        "URL": "https://bioconductor.org/packages/3.19/bioc"
+      },
+      {
+        "Name": "BioCann",
+        "URL": "https://bioconductor.org/packages/3.19/data/annotation"
+      },
+      {
+        "Name": "BioCexp",
+        "URL": "https://bioconductor.org/packages/3.19/data/experiment"
+      },
+      {
+        "Name": "BioCworkflows",
+        "URL": "https://bioconductor.org/packages/3.19/workflows"
+      },
+      {
+        "Name": "BioCbooks",
+        "URL": "https://bioconductor.org/packages/3.19/books"
+      },
       {
         "Name": "carpentries",
         "URL": "https://carpentries.r-universe.dev"
@@ -1795,9 +1815,8 @@
     },
     "duckdb": {
       "Package": "duckdb",
-      "Version": "1.1.3-1",
-      "Source": "Repository",
-      "Repository": "CRAN"
+      "Version": "1.1.2",
+      "Source": "Repository"
     },
     "edgeR": {
       "Package": "edgeR",