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@carpenter-singh-lab

Carpenter–Singh Lab

README.md

The Carpenter–Singh Lab, located at the Broad Institute of MIT and Harvard, is committed to unlocking the hidden potential of cell images through advanced computational techniques. Our mission is to revolutionize the process of identifying disease targets and therapies, ultimately contributing to a brighter future for medicine and human health.

Popular repositories Loading

  1. 2022_Haghighi_NatureMethods 2022_Haghighi_NatureMethods Public

    High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

    Jupyter Notebook 47 10

  2. 2023_Cimini_NatureProtocols 2023_Cimini_NatureProtocols Public

    Optimizing the Cell Painting assay for image-based profiling

    Jupyter Notebook 19 2

  3. motive motive Public

    Python 13 1

  4. 2023_Arevalo_NatComm_BatchCorrection 2023_Arevalo_NatComm_BatchCorrection Public

    Evaluating batch correction methods for image-based cell profiling

    Python 10 6

  5. 2022_Rohban_CellSystems 2022_Rohban_CellSystems Public

    Virtual screening for small-molecule pathway regulators by image-profile matching

    HTML 2

  6. 2024_vanDijk_PLoS_CytoSummaryNet 2024_vanDijk_PLoS_CytoSummaryNet Public

    CytoSummaryNet learns an optimal way to aggregate single-cell features into population-level profiles

    Jupyter Notebook 2

Repositories

Showing 10 of 12 repositories
  • 2024_Iyer_Genemod Public
    carpenter-singh-lab/2024_Iyer_Genemod’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Jan 3, 2025
  • 2023_Arevalo_NatComm_BatchCorrection Public

    Evaluating batch correction methods for image-based cell profiling

    carpenter-singh-lab/2023_Arevalo_NatComm_BatchCorrection’s past year of commit activity
    Python 10 BSD-3-Clause 6 1 2 Updated Jan 3, 2025
  • 2023_Cimini_NatureProtocols Public

    Optimizing the Cell Painting assay for image-based profiling

    carpenter-singh-lab/2023_Cimini_NatureProtocols’s past year of commit activity
    Jupyter Notebook 19 BSD-3-Clause 2 7 0 Updated Jan 3, 2025
  • 2024_Kalinin_mAP Public
    carpenter-singh-lab/2024_Kalinin_mAP’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 3, 2025
  • motive Public
    carpenter-singh-lab/motive’s past year of commit activity
    Python 13 BSD-3-Clause 1 2 0 Updated Jan 3, 2025
  • 2022_Rohban_CellSystems Public

    Virtual screening for small-molecule pathway regulators by image-profile matching

    carpenter-singh-lab/2022_Rohban_CellSystems’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 0 Updated Jan 3, 2025
  • 2024_vanDijk_PLoS_CytoSummaryNet Public

    CytoSummaryNet learns an optimal way to aggregate single-cell features into population-level profiles

    carpenter-singh-lab/2024_vanDijk_PLoS_CytoSummaryNet’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 13 1 Updated Jan 3, 2025
  • 2023_Haghighi_IJCAI Public

    Pseudo-Labeling Enhanced by Privileged Information and its application to In Situ Sequencing Images

    carpenter-singh-lab/2023_Haghighi_IJCAI’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 2 Updated Jan 3, 2025
  • 2024_LacosteHaghighi_Cell_Mislocalization Public

    Cell-painting data analysis corresponding to the "Pervasive mislocalization of pathogenic coding variants underlying human diseases" paper

    carpenter-singh-lab/2024_LacosteHaghighi_Cell_Mislocalization’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 1 Updated Jan 3, 2025
  • 2022_Haghighi_NatureMethods Public

    High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

    carpenter-singh-lab/2022_Haghighi_NatureMethods’s past year of commit activity
    Jupyter Notebook 47 BSD-3-Clause 10 8 1 Updated Jan 3, 2025
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