A novel approach to motif identification in proteins
This code is in BETA and features may change without notice.
Provide a text query file, which is required. If not using manual motifs, also provide one more motif files using the -m flag to generate motifs dynamically.
pip install motiffinder
# main program
motiffinder <query file> -m <optional motif file>
# for help
motiffind -h
# for version
motiffinder -v
Or, clone this repository and set up with:
pip install -r requirements.text
python -m motiffinder <query file> -m <optional motif file>
# alternately, use setup.py to get the motiffinder package
python setup.py install
Written by Carl Vitzthum and Prof. Andrea Tilden