Bump nltk from 3.4.5 to 3.9 #1567
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: pytest | |
| on: | |
| push: | |
| pull_request: | |
| types: [opened, edited, review_requested, synchronize, reopened] | |
| jobs: | |
| conda-build: | |
| timeout-minutes: 70 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: capreolus | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| conda activate capreolus | |
| # delete conda cache to avoid "No space left on device" Exception | |
| conda list | |
| conda clean --all | |
| conda install pytorch=1.8.1 torchvision cpuonly -c pytorch | |
| conda list | |
| # hack to force h5py version. 3.0 is not compatible with TF. | |
| pip install h5py==2.10.0 | |
| # checks every test except those marked download | |
| pytest -vvv | |
| pip-build: | |
| timeout-minutes: 50 | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Set up Java 11 | |
| uses: actions/setup-java@v1 | |
| with: | |
| java-version: '11' | |
| - name: black | |
| uses: lgeiger/black-action@master | |
| with: | |
| args: ". --check --config capreolus/pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip==21.1.3 | |
| # cython should be installed seperately due to a pip bug. For some reason, it tries to build pyjnius before building cython | |
| pip install cython | |
| pip install -r requirements.txt | |
| pip install torch==1.8.1+cu101 torchvision==0.9.1+cu101 -f https://download.pytorch.org/whl/torch_stable.html | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| export PYTHONPATH=${PYTHONPATH}:/home/runner/work/capreolus/capreolus/ | |
| # checks every test except those marked download | |
| python -m pytest -vvv | |
| # download: | |
| # timeout-minutes: 50 | |
| # if: github.ref == 'refs/heads/master' | |
| # runs-on: ubuntu-latest | |
| # strategy: | |
| # max-parallel: 4 | |
| # matrix: | |
| # python-version: [3.7] | |
| # steps: | |
| # - uses: actions/checkout@v1 | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v1 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Set up Java 11 | |
| # uses: actions/setup-java@v1 | |
| # with: | |
| # java-version: '11' | |
| # - name: Install dependencies | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # # cython should be installed seperately due to a pip bug. For some reason, it tries to build pyjnius before building cython | |
| # pip install cython | |
| # pip install -r requirements.txt | |
| # pip install torch==1.6.0+cu101 torchvision==0.7.0+cu101 -f https://download.pytorch.org/whl/torch_stable.html | |
| # - name: Test downloads with pytest | |
| # run: | | |
| # pip install pytest | |
| # export PYTHONPATH=${PYTHONPATH}:/home/runner/work/capreolus/capreolus/ | |
| # # checks only tests marked download | |
| # python -m pytest -vvv -m download |